miRNA display CGI


Results 121 - 140 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 106813 0.67 0.484483
Target:  5'- cGGCCccGCGG-GGCgCCGGGccCGGCGc -3'
miRNA:   3'- -CCGGa-CGCCaCCGaGGCUCucGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 132174 0.67 0.484483
Target:  5'- cGGCCccgGCGGcgcUGcGCgCCGAG-GCGGCc -3'
miRNA:   3'- -CCGGa--CGCC---AC-CGaGGCUCuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 2287 0.67 0.493712
Target:  5'- cGCCgucgGCGGcGGggCCGccGGGCGGCAu -3'
miRNA:   3'- cCGGa---CGCCaCCgaGGCu-CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 6681 0.67 0.493712
Target:  5'- aGGCC-GCGGcGGCcggCCGGGcGCGcGCGc -3'
miRNA:   3'- -CCGGaCGCCaCCGa--GGCUCuCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 102645 0.67 0.493712
Target:  5'- cGUCUcGgGGUGacGCgCCGGGAGCGGCc -3'
miRNA:   3'- cCGGA-CgCCAC--CGaGGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 105100 0.67 0.493712
Target:  5'- cGCCgucgGCGGcGGggCCGccGGGCGGCAu -3'
miRNA:   3'- cCGGa---CGCCaCCgaGGCu-CUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 4321 0.67 0.493712
Target:  5'- cGCCUGCGGguaGuGCUCCGccauguAGGGCGcCAg -3'
miRNA:   3'- cCGGACGCCa--C-CGAGGC------UCUCGCcGU- -5'
6353 5' -62.7 NC_001847.1 + 133284 0.67 0.503021
Target:  5'- aGCCgcGCGGUGcGCUCCGgcgcAGAGUGcGUg -3'
miRNA:   3'- cCGGa-CGCCAC-CGAGGC----UCUCGC-CGu -5'
6353 5' -62.7 NC_001847.1 + 84751 0.67 0.503021
Target:  5'- uGGUagaaGCGGUGGaagCCGGcGGCGGCGc -3'
miRNA:   3'- -CCGga--CGCCACCga-GGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 52156 0.67 0.503021
Target:  5'- aGGCC-GUGGccaGGCUCCGccGGAGCaGCc -3'
miRNA:   3'- -CCGGaCGCCa--CCGAGGC--UCUCGcCGu -5'
6353 5' -62.7 NC_001847.1 + 82440 0.67 0.503021
Target:  5'- aGGUCgggGCGcuUGGCUCCaGGcGCGGCGg -3'
miRNA:   3'- -CCGGa--CGCc-ACCGAGGcUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 4534 0.67 0.503021
Target:  5'- uGCCUcGCGGcGGCcgcCCGcGGGUGGCGc -3'
miRNA:   3'- cCGGA-CGCCaCCGa--GGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 82961 0.67 0.503021
Target:  5'- aGGCCgccugcgaucUGUGGUGGCugcUCCGgcGGAGCcuGGCc -3'
miRNA:   3'- -CCGG----------ACGCCACCG---AGGC--UCUCG--CCGu -5'
6353 5' -62.7 NC_001847.1 + 7230 0.67 0.503021
Target:  5'- uGGCgCUGCagcggcuggucgGGUGGCUgugCGGGcGCGGCGg -3'
miRNA:   3'- -CCG-GACG------------CCACCGAg--GCUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 58201 0.67 0.506766
Target:  5'- cGGCCaGCaGGc-GCUCCGGGcggaucugcccgccgGGCGGCAg -3'
miRNA:   3'- -CCGGaCG-CCacCGAGGCUC---------------UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 131483 0.67 0.508643
Target:  5'- cGGCCUGCuGGcaUGGCUgcuguacgucgcguUCGuguaccugcgccaGGAGCGGCGc -3'
miRNA:   3'- -CCGGACG-CC--ACCGA--------------GGC-------------UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 33203 0.67 0.512405
Target:  5'- cGGCCaUGaCGGacuacgugaUGGCgaugcuggCCGAGuGCGGCu -3'
miRNA:   3'- -CCGG-AC-GCC---------ACCGa-------GGCUCuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 26509 0.67 0.512405
Target:  5'- gGGCCUGcCGGgcgcGGggCCGGGGGCguucGGCc -3'
miRNA:   3'- -CCGGAC-GCCa---CCgaGGCUCUCG----CCGu -5'
6353 5' -62.7 NC_001847.1 + 134192 0.67 0.512405
Target:  5'- cGGCgCaGCGuGgagcGGCgcgcgcgggCCGAGGGCGGCGg -3'
miRNA:   3'- -CCG-GaCGC-Ca---CCGa--------GGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 77820 0.67 0.512405
Target:  5'- cGCUUGUGGUuggcggugcagGGCUCaCGAGcucGCGGCc -3'
miRNA:   3'- cCGGACGCCA-----------CCGAG-GCUCu--CGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.