miRNA display CGI


Results 121 - 140 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 72895 0.67 0.521861
Target:  5'- gGGCagCUGCaGGUGGCgcgccaCGAGgcggucGGCGGCGu -3'
miRNA:   3'- -CCG--GACG-CCACCGag----GCUC------UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 73498 0.67 0.521861
Target:  5'- cGGCC-GCGGUGGCggcgCUGcAGuccAGCgGGCGc -3'
miRNA:   3'- -CCGGaCGCCACCGa---GGC-UC---UCG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 74126 0.71 0.31314
Target:  5'- cGGCCguggugcUGCGcGUGGCgCCGGGgcgaaugauGGCGGCGc -3'
miRNA:   3'- -CCGG-------ACGC-CACCGaGGCUC---------UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 76389 0.71 0.306941
Target:  5'- cGGCCU-CGGggggGGCgCCGGGGgccGCGGCGg -3'
miRNA:   3'- -CCGGAcGCCa---CCGaGGCUCU---CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 77820 0.67 0.512405
Target:  5'- cGCUUGUGGUuggcggugcagGGCUCaCGAGcucGCGGCc -3'
miRNA:   3'- cCGGACGCCA-----------CCGAG-GCUCu--CGCCGu -5'
6353 5' -62.7 NC_001847.1 + 79398 0.75 0.173627
Target:  5'- cGGCCgcgcggGCGcgagccggaccaccGUGGCgcCCGAGGGCGGCGg -3'
miRNA:   3'- -CCGGa-----CGC--------------CACCGa-GGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 79561 0.68 0.448436
Target:  5'- gGGCUcGCGGggGGCgCCGGGcucGCGGCc -3'
miRNA:   3'- -CCGGaCGCCa-CCGaGGCUCu--CGCCGu -5'
6353 5' -62.7 NC_001847.1 + 80274 0.67 0.483565
Target:  5'- gGGCCUccuucaugaaGCGGUgcgcgucaaagguGGCgUCCGAGGcGCGGUu -3'
miRNA:   3'- -CCGGA----------CGCCA-------------CCG-AGGCUCU-CGCCGu -5'
6353 5' -62.7 NC_001847.1 + 80822 0.66 0.579825
Target:  5'- aGGCCgcgcgccgcgacUGgGGgGGCagaUCCGGGcGGCGGCGc -3'
miRNA:   3'- -CCGG------------ACgCCaCCG---AGGCUC-UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 82440 0.67 0.503021
Target:  5'- aGGUCgggGCGcuUGGCUCCaGGcGCGGCGg -3'
miRNA:   3'- -CCGGa--CGCc-ACCGAGGcUCuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 82961 0.67 0.503021
Target:  5'- aGGCCgccugcgaucUGUGGUGGCugcUCCGgcGGAGCcuGGCc -3'
miRNA:   3'- -CCGG----------ACGCCACCG---AGGC--UCUCG--CCGu -5'
6353 5' -62.7 NC_001847.1 + 84022 0.66 0.579825
Target:  5'- cGCCUGUGGUGGU--CGAcGGCGaGCu -3'
miRNA:   3'- cCGGACGCCACCGagGCUcUCGC-CGu -5'
6353 5' -62.7 NC_001847.1 + 84237 0.67 0.531383
Target:  5'- gGGCCgccGCGGgGGag--GAGGGCGGCGa -3'
miRNA:   3'- -CCGGa--CGCCaCCgaggCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 84751 0.67 0.503021
Target:  5'- uGGUagaaGCGGUGGaagCCGGcGGCGGCGc -3'
miRNA:   3'- -CCGga--CGCCACCga-GGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 85136 0.68 0.474428
Target:  5'- gGGCCcagcagGCGGUgggcgcgcgGGCUCCucucgcgGAGGGCGuGCAn -3'
miRNA:   3'- -CCGGa-----CGCCA---------CCGAGG-------CUCUCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 85185 0.7 0.350047
Target:  5'- cGGCCUGCGcGUacucGGCgCCGGGcAGCccGGCGg -3'
miRNA:   3'- -CCGGACGC-CA----CCGaGGCUC-UCG--CCGU- -5'
6353 5' -62.7 NC_001847.1 + 85782 0.71 0.313834
Target:  5'- cGGCCgaUGCGGUGcGCgUCGAGGGUgcgGGCGc -3'
miRNA:   3'- -CCGG--ACGCCAC-CGaGGCUCUCG---CCGU- -5'
6353 5' -62.7 NC_001847.1 + 86474 0.71 0.312447
Target:  5'- cGCCgacgGCGGcacggacgacgaGGCUgCGGGGGCGGCGg -3'
miRNA:   3'- cCGGa---CGCCa-----------CCGAgGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 87866 0.66 0.560303
Target:  5'- gGGCCUGUGGUcGCUgUGGccGcGCGGCu -3'
miRNA:   3'- -CCGGACGCCAcCGAgGCU--CuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 87988 0.7 0.373161
Target:  5'- cGGCacuuUGCGGccgGGC-CCGAGGggcGCGGCGu -3'
miRNA:   3'- -CCGg---ACGCCa--CCGaGGCUCU---CGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.