Results 1 - 20 of 188 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 135008 | 0.66 | 0.970905 |
Target: 5'- -gGCCGGGGCCcgaggcccGCGGGCggggccgggGCg -3' miRNA: 3'- agCGGCCCUGG--------CGCUCGaaauaua--UG- -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 134946 | 0.67 | 0.944062 |
Target: 5'- gCGCCGGGGgCGgGGGCgggg---GCg -3' miRNA: 3'- aGCGGCCCUgGCgCUCGaaauauaUG- -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 134250 | 0.66 | 0.972359 |
Target: 5'- -gGCCGGcGGCCGCG-GCggccccgGCg -3' miRNA: 3'- agCGGCC-CUGGCGCuCGaaauauaUG- -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 134239 | 0.68 | 0.939294 |
Target: 5'- -gGCCGGGuCCGCcucGAGCUcgAUGa-- -3' miRNA: 3'- agCGGCCCuGGCG---CUCGAaaUAUaug -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 133979 | 0.75 | 0.58355 |
Target: 5'- gCGCCGGGGCUGgGAGCgcgcgcgGCa -3' miRNA: 3'- aGCGGCCCUGGCgCUCGaaauauaUG- -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 132451 | 0.71 | 0.811565 |
Target: 5'- -gGCCGGGgcGCCGCGGGCg-------- -3' miRNA: 3'- agCGGCCC--UGGCGCUCGaaauauaug -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 132407 | 0.67 | 0.944062 |
Target: 5'- gCGCCGGG-CCGgGGGCcg-GUGg-- -3' miRNA: 3'- aGCGGCCCuGGCgCUCGaaaUAUaug -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 132006 | 0.72 | 0.774069 |
Target: 5'- cCGCCGGcGCCGCcGGGCUcccgGUGCu -3' miRNA: 3'- aGCGGCCcUGGCG-CUCGAaauaUAUG- -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 130926 | 0.74 | 0.672259 |
Target: 5'- gCGCCGGcACCGCGcagGGCUUUGgcUGCc -3' miRNA: 3'- aGCGGCCcUGGCGC---UCGAAAUauAUG- -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 129523 | 0.69 | 0.891992 |
Target: 5'- gCGCgCGGGACCGCG-GCg-------- -3' miRNA: 3'- aGCG-GCCCUGGCGCuCGaaauauaug -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 129332 | 0.66 | 0.970007 |
Target: 5'- -gGCgCGGGGCCGgGGGCguucggccAUGCu -3' miRNA: 3'- agCG-GCCCUGGCgCUCGaaaua---UAUG- -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 128774 | 0.68 | 0.934272 |
Target: 5'- -gGCCaaagGGGGCCGCGGGCg-------- -3' miRNA: 3'- agCGG----CCCUGGCGCUCGaaauauaug -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 128177 | 0.67 | 0.945899 |
Target: 5'- cCGCCGGGcggaagcgccGCCGCGAccccgcgccuggcccGuCUUcGUGUGCa -3' miRNA: 3'- aGCGGCCC----------UGGCGCU---------------C-GAAaUAUAUG- -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 127092 | 0.68 | 0.928995 |
Target: 5'- gCGCgCGGG-CCGCGcGGCUUUGg---- -3' miRNA: 3'- aGCG-GCCCuGGCGC-UCGAAAUauaug -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 126617 | 0.73 | 0.693219 |
Target: 5'- aCGCCGGGACagagGCGGGCgucgaaGUGCc -3' miRNA: 3'- aGCGGCCCUGg---CGCUCGaaaua-UAUG- -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 125863 | 1.11 | 0.003842 |
Target: 5'- gUCGCCGGGACCGCGAGCUUUAUAUACa -3' miRNA: 3'- -AGCGGCCCUGGCGCUCGAAAUAUAUG- -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 125577 | 0.68 | 0.934272 |
Target: 5'- -gGCCGcGGGCgGCGGGCUggacg-GCu -3' miRNA: 3'- agCGGC-CCUGgCGCUCGAaauauaUG- -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 125207 | 0.67 | 0.952846 |
Target: 5'- gCGCCcGGGCCGCG-GCgagc-GUGCu -3' miRNA: 3'- aGCGGcCCUGGCGCuCGaaauaUAUG- -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 124727 | 0.66 | 0.970608 |
Target: 5'- -gGCCGaGGCCGCGGGCgag----GCg -3' miRNA: 3'- agCGGCcCUGGCGCUCGaaauauaUG- -5' |
|||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 123570 | 0.72 | 0.764331 |
Target: 5'- -gGCCGGGgccGCCGCGAGCg-------- -3' miRNA: 3'- agCGGCCC---UGGCGCUCGaaauauaug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home