miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 135008 0.66 0.970905
Target:  5'- -gGCCGGGGCCcgaggcccGCGGGCggggccgggGCg -3'
miRNA:   3'- agCGGCCCUGG--------CGCUCGaaauaua--UG- -5'
6354 3' -52.4 NC_001847.1 + 134946 0.67 0.944062
Target:  5'- gCGCCGGGGgCGgGGGCgggg---GCg -3'
miRNA:   3'- aGCGGCCCUgGCgCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 134250 0.66 0.972359
Target:  5'- -gGCCGGcGGCCGCG-GCggccccgGCg -3'
miRNA:   3'- agCGGCC-CUGGCGCuCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 134239 0.68 0.939294
Target:  5'- -gGCCGGGuCCGCcucGAGCUcgAUGa-- -3'
miRNA:   3'- agCGGCCCuGGCG---CUCGAaaUAUaug -5'
6354 3' -52.4 NC_001847.1 + 133979 0.75 0.58355
Target:  5'- gCGCCGGGGCUGgGAGCgcgcgcgGCa -3'
miRNA:   3'- aGCGGCCCUGGCgCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 132451 0.71 0.811565
Target:  5'- -gGCCGGGgcGCCGCGGGCg-------- -3'
miRNA:   3'- agCGGCCC--UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 132407 0.67 0.944062
Target:  5'- gCGCCGGG-CCGgGGGCcg-GUGg-- -3'
miRNA:   3'- aGCGGCCCuGGCgCUCGaaaUAUaug -5'
6354 3' -52.4 NC_001847.1 + 132006 0.72 0.774069
Target:  5'- cCGCCGGcGCCGCcGGGCUcccgGUGCu -3'
miRNA:   3'- aGCGGCCcUGGCG-CUCGAaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 130926 0.74 0.672259
Target:  5'- gCGCCGGcACCGCGcagGGCUUUGgcUGCc -3'
miRNA:   3'- aGCGGCCcUGGCGC---UCGAAAUauAUG- -5'
6354 3' -52.4 NC_001847.1 + 129523 0.69 0.891992
Target:  5'- gCGCgCGGGACCGCG-GCg-------- -3'
miRNA:   3'- aGCG-GCCCUGGCGCuCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 129332 0.66 0.970007
Target:  5'- -gGCgCGGGGCCGgGGGCguucggccAUGCu -3'
miRNA:   3'- agCG-GCCCUGGCgCUCGaaaua---UAUG- -5'
6354 3' -52.4 NC_001847.1 + 128774 0.68 0.934272
Target:  5'- -gGCCaaagGGGGCCGCGGGCg-------- -3'
miRNA:   3'- agCGG----CCCUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 128177 0.67 0.945899
Target:  5'- cCGCCGGGcggaagcgccGCCGCGAccccgcgccuggcccGuCUUcGUGUGCa -3'
miRNA:   3'- aGCGGCCC----------UGGCGCU---------------C-GAAaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 127092 0.68 0.928995
Target:  5'- gCGCgCGGG-CCGCGcGGCUUUGg---- -3'
miRNA:   3'- aGCG-GCCCuGGCGC-UCGAAAUauaug -5'
6354 3' -52.4 NC_001847.1 + 126617 0.73 0.693219
Target:  5'- aCGCCGGGACagagGCGGGCgucgaaGUGCc -3'
miRNA:   3'- aGCGGCCCUGg---CGCUCGaaaua-UAUG- -5'
6354 3' -52.4 NC_001847.1 + 125863 1.11 0.003842
Target:  5'- gUCGCCGGGACCGCGAGCUUUAUAUACa -3'
miRNA:   3'- -AGCGGCCCUGGCGCUCGAAAUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 125577 0.68 0.934272
Target:  5'- -gGCCGcGGGCgGCGGGCUggacg-GCu -3'
miRNA:   3'- agCGGC-CCUGgCGCUCGAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 125207 0.67 0.952846
Target:  5'- gCGCCcGGGCCGCG-GCgagc-GUGCu -3'
miRNA:   3'- aGCGGcCCUGGCGCuCGaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 124727 0.66 0.970608
Target:  5'- -gGCCGaGGCCGCGGGCgag----GCg -3'
miRNA:   3'- agCGGCcCUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 123570 0.72 0.764331
Target:  5'- -gGCCGGGgccGCCGCGAGCg-------- -3'
miRNA:   3'- agCGGCCC---UGGCGCUCGaaauauaug -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.