miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 13117 0.72 0.764331
Target:  5'- -gGCCGGGGCgCGCGGGCg-------- -3'
miRNA:   3'- agCGGCCCUG-GCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 29193 0.72 0.774069
Target:  5'- cCGCCGGcGCCGCcGGGCUcccgGUGCu -3'
miRNA:   3'- aGCGGCCcUGGCG-CUCGAaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 132006 0.72 0.774069
Target:  5'- cCGCCGGcGCCGCcGGGCUcccgGUGCu -3'
miRNA:   3'- aGCGGCCcUGGCG-CUCGAaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 116160 0.72 0.783671
Target:  5'- gCGCUGGcGGCCGCGGGCg-------- -3'
miRNA:   3'- aGCGGCC-CUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 41647 0.71 0.793127
Target:  5'- gCGCCGGGggGCCGCGAGaa----GUACc -3'
miRNA:   3'- aGCGGCCC--UGGCGCUCgaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 67094 0.71 0.793127
Target:  5'- gCGCCGcGaGGCCGCcgugucGAGCUUUGUgcagGUGCg -3'
miRNA:   3'- aGCGGC-C-CUGGCG------CUCGAAAUA----UAUG- -5'
6354 3' -52.4 NC_001847.1 + 132451 0.71 0.811565
Target:  5'- -gGCCGGGgcGCCGCGGGCg-------- -3'
miRNA:   3'- agCGGCCC--UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 29638 0.71 0.811565
Target:  5'- -gGCCGGGgcGCCGCGGGCg-------- -3'
miRNA:   3'- agCGGCCC--UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 15313 0.71 0.812469
Target:  5'- gCGUCgGGGGCCGCGGGCguagcggggGCg -3'
miRNA:   3'- aGCGG-CCCUGGCGCUCGaaauaua--UG- -5'
6354 3' -52.4 NC_001847.1 + 9660 0.71 0.819638
Target:  5'- -aGCCGGGcguccucgcgcccGCCGCGAGCUg------- -3'
miRNA:   3'- agCGGCCC-------------UGGCGCUCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 43286 0.71 0.820527
Target:  5'- aCGCCGcGcGugCGCGGGCUgcgGaGUACg -3'
miRNA:   3'- aGCGGC-C-CugGCGCUCGAaa-UaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 71727 0.71 0.829306
Target:  5'- cCGCCGGcGCCGCGuGCgcucccGUGCg -3'
miRNA:   3'- aGCGGCCcUGGCGCuCGaaaua-UAUG- -5'
6354 3' -52.4 NC_001847.1 + 41622 0.71 0.829306
Target:  5'- gCGCucCGGGGCCGCcGGGCgagUGgGUGCg -3'
miRNA:   3'- aGCG--GCCCUGGCG-CUCGaa-AUaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 75141 0.7 0.837893
Target:  5'- cCGCCGGGGCCgGCGGuGCUcucggUUAgguuuUGCa -3'
miRNA:   3'- aGCGGCCCUGG-CGCU-CGA-----AAUau---AUG- -5'
6354 3' -52.4 NC_001847.1 + 52284 0.7 0.859262
Target:  5'- gCGCCGGcuuugugugcgcGACCGCGGGCgcgggcgGCg -3'
miRNA:   3'- aGCGGCC------------CUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 67326 0.7 0.862421
Target:  5'- cCGCgCGGacGCCGCG-GCUUUGUcgGCg -3'
miRNA:   3'- aGCG-GCCc-UGGCGCuCGAAAUAuaUG- -5'
6354 3' -52.4 NC_001847.1 + 97215 0.7 0.867864
Target:  5'- cUCGCCGGGG-CGCGAGUcgggaccaagcgugUUgucgcggugUAUAUACa -3'
miRNA:   3'- -AGCGGCCCUgGCGCUCG--------------AA---------AUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 30112 0.7 0.870163
Target:  5'- gUGCCGGGGCaGCaGAuGCUggcgAUAUACg -3'
miRNA:   3'- aGCGGCCCUGgCG-CU-CGAaa--UAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 47399 0.7 0.877675
Target:  5'- aUCGCCGGcuccgugaGGCCGUGGGCggcGUcUGCg -3'
miRNA:   3'- -AGCGGCC--------CUGGCGCUCGaaaUAuAUG- -5'
6354 3' -52.4 NC_001847.1 + 8402 0.7 0.877675
Target:  5'- cUGCCGGGAuaGCGGGagggcAUAUGCa -3'
miRNA:   3'- aGCGGCCCUggCGCUCgaaa-UAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.