miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 14448 0.66 0.974305
Target:  5'- gCGCCGGGgugcgcgGCCGCGgccucugggucuccgGGCUcaccgaagcUGUGUACa -3'
miRNA:   3'- aGCGGCCC-------UGGCGC---------------UCGAa--------AUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 15032 0.66 0.967515
Target:  5'- -aGCCGcGGCCGCcGGGCgagcUGUGCg -3'
miRNA:   3'- agCGGCcCUGGCG-CUCGaaauAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 15313 0.71 0.812469
Target:  5'- gCGUCgGGGGCCGCGGGCguagcggggGCg -3'
miRNA:   3'- aGCGG-CCCUGGCGCUCGaaauaua--UG- -5'
6354 3' -52.4 NC_001847.1 + 15523 0.75 0.58355
Target:  5'- cUCGgCGGGAgCCGCGGGCUgcuggcgccgGUGCg -3'
miRNA:   3'- -AGCgGCCCU-GGCGCUCGAaaua------UAUG- -5'
6354 3' -52.4 NC_001847.1 + 15780 0.67 0.956869
Target:  5'- uUCGCCGGcGgcaagcGCCGCGcggcgggaGGCggcgGUGUACg -3'
miRNA:   3'- -AGCGGCC-C------UGGCGC--------UCGaaa-UAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 16458 0.66 0.973484
Target:  5'- -aGCCGGGGCUGCG-GCc-------- -3'
miRNA:   3'- agCGGCCCUGGCGCuCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 21216 0.66 0.97615
Target:  5'- cCGCCGcGACCGCGcGCUg------- -3'
miRNA:   3'- aGCGGCcCUGGCGCuCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 21914 0.66 0.970608
Target:  5'- -gGCCGaGGCCGCGGGCgag----GCg -3'
miRNA:   3'- agCGGCcCUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 22021 0.69 0.891992
Target:  5'- aCGCCGGcGACCGUGgaAGCgcacagcGUGCg -3'
miRNA:   3'- aGCGGCC-CUGGCGC--UCGaaaua--UAUG- -5'
6354 3' -52.4 NC_001847.1 + 22394 0.67 0.952846
Target:  5'- gCGCCcGGGCCGCG-GCgagc-GUGCu -3'
miRNA:   3'- aGCGGcCCUGGCGCuCGaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 24520 0.67 0.956869
Target:  5'- gCGUCGGGGCuCGCGcGCUgcacgAUuuccGUGCa -3'
miRNA:   3'- aGCGGCCCUG-GCGCuCGAaa---UA----UAUG- -5'
6354 3' -52.4 NC_001847.1 + 24744 0.66 0.964198
Target:  5'- -gGCCGGG-CCGUGcagccGGCUgag-GUGCg -3'
miRNA:   3'- agCGGCCCuGGCGC-----UCGAaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 25239 0.72 0.744488
Target:  5'- gUCGCgGGGACaaCGAGCUgccgGUACa -3'
miRNA:   3'- -AGCGgCCCUGgcGCUCGAaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 25961 0.68 0.934272
Target:  5'- -gGCCaaagGGGGCCGCGGGCg-------- -3'
miRNA:   3'- agCGG----CCCUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 26519 0.66 0.970007
Target:  5'- -gGCgCGGGGCCGgGGGCguucggccAUGCu -3'
miRNA:   3'- agCG-GCCCUGGCgCUCGaaaua---UAUG- -5'
6354 3' -52.4 NC_001847.1 + 27216 0.69 0.911631
Target:  5'- gCGCCGGGGCgCuCGAGCUgcggGUcGCa -3'
miRNA:   3'- aGCGGCCCUG-GcGCUCGAaauaUA-UG- -5'
6354 3' -52.4 NC_001847.1 + 28098 0.66 0.978615
Target:  5'- cUGcCCGGGGCCGCGcGCg-------- -3'
miRNA:   3'- aGC-GGCCCUGGCGCuCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 29193 0.72 0.774069
Target:  5'- cCGCCGGcGCCGCcGGGCUcccgGUGCu -3'
miRNA:   3'- aGCGGCCcUGGCG-CUCGAaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 29314 0.66 0.964198
Target:  5'- -gGCCGcGGacaagcgaGCCGCGAGCgcga-GUGCg -3'
miRNA:   3'- agCGGC-CC--------UGGCGCUCGaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 29594 0.67 0.944062
Target:  5'- gCGCCGGG-CCGgGGGCcg-GUGg-- -3'
miRNA:   3'- aGCGGCCCuGGCgCUCGaaaUAUaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.