Results 21 - 40 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 101504 | 0.69 | 0.884953 |
Target: 5'- gCGCCGGcugcACCGCGGGUgUUUGUcgACc -3' miRNA: 3'- aGCGGCCc---UGGCGCUCG-AAAUAuaUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 97215 | 0.7 | 0.867864 |
Target: 5'- cUCGCCGGGG-CGCGAGUcgggaccaagcgugUUgucgcggugUAUAUACa -3' miRNA: 3'- -AGCGGCCCUgGCGCUCG--------------AA---------AUAUAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 103903 | 0.72 | 0.76335 |
Target: 5'- aCGCCGGGcgccgcgGCCGCGGGCg-------- -3' miRNA: 3'- aGCGGCCC-------UGGCGCUCGaaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 15523 | 0.75 | 0.58355 |
Target: 5'- cUCGgCGGGAgCCGCGGGCUgcuggcgccgGUGCg -3' miRNA: 3'- -AGCgGCCCU-GGCGCUCGAaaua------UAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 5824 | 0.68 | 0.917674 |
Target: 5'- gCGCCGGGugCGUGcAGCa-------- -3' miRNA: 3'- aGCGGCCCugGCGC-UCGaaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 106401 | 0.69 | 0.898787 |
Target: 5'- -gGuCCGGGcCCGCGAGCUUc------ -3' miRNA: 3'- agC-GGCCCuGGCGCUCGAAauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 75141 | 0.7 | 0.837893 |
Target: 5'- cCGCCGGGGCCgGCGGuGCUcucggUUAgguuuUGCa -3' miRNA: 3'- aGCGGCCCUGG-CGCU-CGA-----AAUau---AUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 66067 | 0.76 | 0.566805 |
Target: 5'- gCGCCGGGGgcgaCGCGGGCUUUGagcUGCu -3' miRNA: 3'- aGCGGCCCUg---GCGCUCGAAAUau-AUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 54502 | 0.69 | 0.898787 |
Target: 5'- gCGCCGGGGCCG-GGGUggggg--GCg -3' miRNA: 3'- aGCGGCCCUGGCgCUCGaaauauaUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 105795 | 0.79 | 0.410143 |
Target: 5'- cCGCCGGGGCCGCGcGCUggAgccGCg -3' miRNA: 3'- aGCGGCCCUGGCGCuCGAaaUauaUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 52284 | 0.7 | 0.859262 |
Target: 5'- gCGCCGGcuuugugugcgcGACCGCGGGCgcgggcgGCg -3' miRNA: 3'- aGCGGCC------------CUGGCGCUCGaaauauaUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 105597 | 0.69 | 0.884953 |
Target: 5'- cCGCCGgcggccuccaGGGCCGCGAGCg-------- -3' miRNA: 3'- aGCGGC----------CCUGGCGCUCGaaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 132451 | 0.71 | 0.811565 |
Target: 5'- -gGCCGGGgcGCCGCGGGCg-------- -3' miRNA: 3'- agCGGCCC--UGGCGCUCGaaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 13117 | 0.72 | 0.764331 |
Target: 5'- -gGCCGGGGCgCGCGGGCg-------- -3' miRNA: 3'- agCGGCCCUG-GCGCUCGaaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 3869 | 0.75 | 0.629994 |
Target: 5'- gCGCCGGGGCUGCGcAGCUc------- -3' miRNA: 3'- aGCGGCCCUGGCGC-UCGAaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 83951 | 0.75 | 0.598281 |
Target: 5'- gCGCgCGGGGCCGgGGGCggagacGUGUACc -3' miRNA: 3'- aGCG-GCCCUGGCgCUCGaaa---UAUAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 47409 | 0.68 | 0.923462 |
Target: 5'- aCGUCGuagacGGCCGUGAGCUUcuccgagAUGUACg -3' miRNA: 3'- aGCGGCc----CUGGCGCUCGAAa------UAUAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 59509 | 0.68 | 0.917674 |
Target: 5'- gCGCCGaGGCCGCaccGGCUUg--GUGCg -3' miRNA: 3'- aGCGGCcCUGGCGc--UCGAAauaUAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 69269 | 0.69 | 0.911631 |
Target: 5'- cUGgCGGcGGCCGCGGGCUUccucUACg -3' miRNA: 3'- aGCgGCC-CUGGCGCUCGAAauauAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 53362 | 0.69 | 0.898787 |
Target: 5'- cUGCUGGcGGCCGCGGGCa-------- -3' miRNA: 3'- aGCGGCC-CUGGCGCUCGaaauauaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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