miRNA display CGI


Results 101 - 120 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 13551 0.67 0.880364
Target:  5'- gCCGgGGCGgcGCGGUgGGUUGcauugccaaauGCCCUu -3'
miRNA:   3'- -GGCgUCGCaaCGCCAgUUAGU-----------CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 42069 0.67 0.880364
Target:  5'- gCUGguGcCGcUGCGG-CGcAUCGGCCUCg -3'
miRNA:   3'- -GGCguC-GCaACGCCaGU-UAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 44038 0.67 0.880364
Target:  5'- gCUGCAGCGaggcGCGcGUCGGggCcGCCCUg -3'
miRNA:   3'- -GGCGUCGCaa--CGC-CAGUUa-GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 50801 0.67 0.880364
Target:  5'- cUCGCGGCGcUGCGGcCGGUaCGGUuuUa -3'
miRNA:   3'- -GGCGUCGCaACGCCaGUUA-GUCGggG- -5'
6354 5' -55.7 NC_001847.1 + 53772 0.67 0.880364
Target:  5'- -gGCGGCGaggGCGG-CAGcaccgCAGCCgCCg -3'
miRNA:   3'- ggCGUCGCaa-CGCCaGUUa----GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 102152 0.67 0.86576
Target:  5'- aCCaCGGCGgcGCGGcccgccgCAAgcUCAGCCgCCa -3'
miRNA:   3'- -GGcGUCGCaaCGCCa------GUU--AGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 91660 0.67 0.858139
Target:  5'- aCgGCGGCGcgGCGGgacgCGAUCGcGCgCUCg -3'
miRNA:   3'- -GgCGUCGCaaCGCCa---GUUAGU-CG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 74615 0.67 0.858139
Target:  5'- uCCGCGGUGUgaGCGGUgccgCGGCCa- -3'
miRNA:   3'- -GGCGUCGCAa-CGCCAguuaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 101393 0.67 0.86576
Target:  5'- cCCGCGGCGccGcCGG-CAAUCGGgggucucgucUCCCg -3'
miRNA:   3'- -GGCGUCGCaaC-GCCaGUUAGUC----------GGGG- -5'
6354 5' -55.7 NC_001847.1 + 101641 0.67 0.86576
Target:  5'- uCCGUGuCGUcaaugGCGGUCAGgucggaggugcUgAGCCCCg -3'
miRNA:   3'- -GGCGUcGCAa----CGCCAGUU-----------AgUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 59320 0.67 0.86576
Target:  5'- gCGCGGCGccgGCGGcgcCGuacCAGCCCg -3'
miRNA:   3'- gGCGUCGCaa-CGCCa--GUua-GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 53086 0.67 0.86576
Target:  5'- cCCGgcuCAGCGUucgGCGGggCGG-CGGCCCg -3'
miRNA:   3'- -GGC---GUCGCAa--CGCCa-GUUaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 13149 0.67 0.86576
Target:  5'- gCCGCGGCcg-GCGGUUGGgcugcuggCAGCCa- -3'
miRNA:   3'- -GGCGUCGcaaCGCCAGUUa-------GUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 108032 0.67 0.858139
Target:  5'- gCCGCGGCGgccgGCGGggcgCGcgCGGCa-- -3'
miRNA:   3'- -GGCGUCGCaa--CGCCa---GUuaGUCGggg -5'
6354 5' -55.7 NC_001847.1 + 107689 0.67 0.858139
Target:  5'- -gGCGGCGggcaGCGG-CAG--GGCCCCc -3'
miRNA:   3'- ggCGUCGCaa--CGCCaGUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 100591 0.67 0.858139
Target:  5'- gCCGCuGCa--GCGGcCGAgCAGCCCg -3'
miRNA:   3'- -GGCGuCGcaaCGCCaGUUaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 81362 0.67 0.858139
Target:  5'- cUCGCGGCGgcUGCGGUgCug-CcGCCCUc -3'
miRNA:   3'- -GGCGUCGCa-ACGCCA-GuuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 78203 0.67 0.858139
Target:  5'- cUCGCGGCGgcUGCGGUgCAccGUCGuGUUCCc -3'
miRNA:   3'- -GGCGUCGCa-ACGCCA-GU--UAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 116578 0.67 0.858139
Target:  5'- gCGCGGCacacggGcCGGUCAccgAGCCCCg -3'
miRNA:   3'- gGCGUCGcaa---C-GCCAGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 67544 0.67 0.880364
Target:  5'- uCCGCAgGCGcggGCGGUUcucccaGAUCGGCgCg -3'
miRNA:   3'- -GGCGU-CGCaa-CGCCAG------UUAGUCGgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.