miRNA display CGI


Results 121 - 140 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 74615 0.67 0.858139
Target:  5'- uCCGCGGUGUgaGCGGUgccgCGGCCa- -3'
miRNA:   3'- -GGCGUCGCAa-CGCCAguuaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 72541 0.67 0.858139
Target:  5'- uUCGCGGCGa-GCGGggCGAUC-GCCgCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCa-GUUAGuCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 5219 0.67 0.858139
Target:  5'- gCCGCGGCGgccgGCGGggcgCGcgCGGCa-- -3'
miRNA:   3'- -GGCGUCGCaa--CGCCa---GUuaGUCGggg -5'
6354 5' -55.7 NC_001847.1 + 47207 0.67 0.87317
Target:  5'- aCGCucaccGCGUgcGCGGcCGcgccCAGCCCCa -3'
miRNA:   3'- gGCGu----CGCAa-CGCCaGUua--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 134946 0.67 0.880364
Target:  5'- gCGCcgggGGCGgggGCGGgggCGGg-GGCCCCg -3'
miRNA:   3'- gGCG----UCGCaa-CGCCa--GUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 15549 0.67 0.880364
Target:  5'- gCCGguGCGcgcGCGGccgUCGGgccgCGGCCgCCg -3'
miRNA:   3'- -GGCguCGCaa-CGCC---AGUUa---GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 67544 0.67 0.880364
Target:  5'- uCCGCAgGCGcggGCGGUUcucccaGAUCGGCgCg -3'
miRNA:   3'- -GGCGU-CGCaa-CGCCAG------UUAGUCGgGg -5'
6354 5' -55.7 NC_001847.1 + 33701 0.67 0.880364
Target:  5'- cUCGCGGCGcgGCGG-CGcgUGGCCg- -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 67478 0.67 0.87317
Target:  5'- gCCGCGGCGUcgucGCaGUCAcaGUCguaaucguAGCCgCCg -3'
miRNA:   3'- -GGCGUCGCAa---CGcCAGU--UAG--------UCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 52511 0.67 0.850312
Target:  5'- aCGgAGCGc-GCGGcCGcgCGGCCCg -3'
miRNA:   3'- gGCgUCGCaaCGCCaGUuaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 48637 0.67 0.850312
Target:  5'- gCCGCGGCG--GCGGggCGccgCcGCCCCc -3'
miRNA:   3'- -GGCGUCGCaaCGCCa-GUua-GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 55713 0.67 0.847925
Target:  5'- gCGCgagggggcgacagAGCGggcacgGCGGUCcuaguacgcgcUCAGCCCCa -3'
miRNA:   3'- gGCG-------------UCGCaa----CGCCAGuu---------AGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 13108 0.67 0.850312
Target:  5'- gCCGCcguccuccucGGC--UGCGGccgCGAUCAGCaCCCc -3'
miRNA:   3'- -GGCG----------UCGcaACGCCa--GUUAGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 17532 0.67 0.850312
Target:  5'- aCCGCGGa--UGCGGgucUCAGagAGCCCg -3'
miRNA:   3'- -GGCGUCgcaACGCC---AGUUagUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 44301 0.67 0.850312
Target:  5'- gCGCGGCGcgGCGGgc---CAGCgCCa -3'
miRNA:   3'- gGCGUCGCaaCGCCaguuaGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 100587 0.67 0.850312
Target:  5'- gUGCAGCuugGCGGcCug-UGGCCCCa -3'
miRNA:   3'- gGCGUCGcaaCGCCaGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 603 0.67 0.850312
Target:  5'- uCCGCGGCcgcuccgcaGCGG-CGcgCGGCCCg -3'
miRNA:   3'- -GGCGUCGcaa------CGCCaGUuaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 100084 0.67 0.850312
Target:  5'- cCCGaGGCGgcGaacGUCAG-CAGCCCCg -3'
miRNA:   3'- -GGCgUCGCaaCgc-CAGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 65985 0.67 0.858139
Target:  5'- -gGCAGCag-GCGGgau-UCAGCCCg -3'
miRNA:   3'- ggCGUCGcaaCGCCaguuAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 4876 0.67 0.858139
Target:  5'- -gGCGGCGggcaGCGG-CAG--GGCCCCc -3'
miRNA:   3'- ggCGUCGCaa--CGCCaGUUagUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.