miRNA display CGI


Results 141 - 160 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 13108 0.67 0.850312
Target:  5'- gCCGCcguccuccucGGC--UGCGGccgCGAUCAGCaCCCc -3'
miRNA:   3'- -GGCG----------UCGcaACGCCa--GUUAGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 61327 0.68 0.84552
Target:  5'- gCGgGGCGggGCGGgcgCGccuagcccaccggcaGgCAGCCCCg -3'
miRNA:   3'- gGCgUCGCaaCGCCa--GU---------------UaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 134049 0.68 0.811859
Target:  5'- aCGCGGCGUcuccagagucacagGCGGggagcagCGAaCAGCCCg -3'
miRNA:   3'- gGCGUCGCAa-------------CGCCa------GUUaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 115815 0.68 0.799432
Target:  5'- gCCGCGGCGcUUGCG-UUAA-CAGCCa- -3'
miRNA:   3'- -GGCGUCGC-AACGCcAGUUaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 46689 0.68 0.80834
Target:  5'- aCGC-GCGc-GCGGUCGGggcccgCGGCCCa -3'
miRNA:   3'- gGCGuCGCaaCGCCAGUUa-----GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 34131 0.68 0.80834
Target:  5'- gCCGCGGCG--GCGG-CAGUaacuGCCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUUAgu--CGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 31963 0.68 0.80834
Target:  5'- gCGCGGCGc-GCGGggCG---GGCCCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCa-GUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 7118 0.68 0.80834
Target:  5'- gCCGCAGCccaccUUGcCGGUCuu---GCCCCc -3'
miRNA:   3'- -GGCGUCGc----AAC-GCCAGuuaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 37768 0.68 0.799432
Target:  5'- gCGCAGC---GCGuucgCGAUCAGCUCCa -3'
miRNA:   3'- gGCGUCGcaaCGCca--GUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 101013 0.68 0.817088
Target:  5'- gCCGCGGCGgccaccGCGG-CAGgcgccgcaGGCUCCg -3'
miRNA:   3'- -GGCGUCGCaa----CGCCaGUUag------UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 127351 0.68 0.80834
Target:  5'- gCCGCGGCaGggGCGG-CGG--GGCCCg -3'
miRNA:   3'- -GGCGUCG-CaaCGCCaGUUagUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 132547 0.68 0.817088
Target:  5'- gCGCGGCGggcucgcgUGCGGcCGcggCGGCCgCg -3'
miRNA:   3'- gGCGUCGCa-------ACGCCaGUua-GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 60918 0.68 0.825667
Target:  5'- aCCGCGucccCGUUGCagaGGUCAAagGGgCCCg -3'
miRNA:   3'- -GGCGUc---GCAACG---CCAGUUagUCgGGG- -5'
6354 5' -55.7 NC_001847.1 + 995 0.68 0.825667
Target:  5'- gCCGCGGCG--GCGG-CAcgC-GCUCCa -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 1256 0.68 0.825667
Target:  5'- gCCGCAGCGgcGCGc-CG---AGCCCCc -3'
miRNA:   3'- -GGCGUCGCaaCGCcaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 483 0.68 0.825667
Target:  5'- -aGCAGCGgcgGCGG-CGGggCGGCCgCg -3'
miRNA:   3'- ggCGUCGCaa-CGCCaGUUa-GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 49383 0.68 0.824817
Target:  5'- gCCGCugcccccGGCGUUGCcGUCAuggCGgGCUCCg -3'
miRNA:   3'- -GGCG-------UCGCAACGcCAGUua-GU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 81858 0.68 0.823111
Target:  5'- -aGCGGCGUgagGCGGaCGcgCGccugggcgcgcagcGCCCCg -3'
miRNA:   3'- ggCGUCGCAa--CGCCaGUuaGU--------------CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 86932 0.68 0.817088
Target:  5'- -gGCGGCGcUGCGcUCc-UCGGCCCUg -3'
miRNA:   3'- ggCGUCGCaACGCcAGuuAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 69505 0.68 0.817088
Target:  5'- aCGCGGcCGUUgGCGGcgCAGccaAGCCCUg -3'
miRNA:   3'- gGCGUC-GCAA-CGCCa-GUUag-UCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.