miRNA display CGI


Results 161 - 180 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 86932 0.68 0.817088
Target:  5'- -gGCGGCGcUGCGcUCc-UCGGCCCUg -3'
miRNA:   3'- ggCGUCGCaACGCcAGuuAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 81858 0.68 0.823111
Target:  5'- -aGCGGCGUgagGCGGaCGcgCGccugggcgcgcagcGCCCCg -3'
miRNA:   3'- ggCGUCGCAa--CGCCaGUuaGU--------------CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 30566 0.68 0.837378
Target:  5'- uCCGCGGCGUcuggGacgaGGUCcagGAggaccgccgcguagCGGCCCCg -3'
miRNA:   3'- -GGCGUCGCAa---Cg---CCAG---UUa-------------GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 64440 0.68 0.834068
Target:  5'- gUCGUAGUcg-GCGGcCAcggcCAGCCCCg -3'
miRNA:   3'- -GGCGUCGcaaCGCCaGUua--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 99108 0.68 0.834068
Target:  5'- gCCGC-GCGUagUGCucGUCcgcgcgCAGCCCCa -3'
miRNA:   3'- -GGCGuCGCA--ACGc-CAGuua---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 104344 0.68 0.834068
Target:  5'- gCCGCGGCGgcagacGCGG-CGgcGUCcGCgCCCg -3'
miRNA:   3'- -GGCGUCGCaa----CGCCaGU--UAGuCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 14155 0.68 0.834068
Target:  5'- gCGCAGCG--GCGGcCGGggCGGCCgCg -3'
miRNA:   3'- gGCGUCGCaaCGCCaGUUa-GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 31227 0.68 0.834068
Target:  5'- gCCGCGGCGgcgccgcccGCGGcCg--CGGCgCCCg -3'
miRNA:   3'- -GGCGUCGCaa-------CGCCaGuuaGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 69145 0.68 0.834068
Target:  5'- gCCGUGGCGUgcccgGCGGUgCAcaUAGCCg- -3'
miRNA:   3'- -GGCGUCGCAa----CGCCA-GUuaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 61327 0.68 0.84552
Target:  5'- gCGgGGCGggGCGGgcgCGccuagcccaccggcaGgCAGCCCCg -3'
miRNA:   3'- gGCgUCGCaaCGCCa--GU---------------UaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 134040 0.68 0.834068
Target:  5'- gCCGCGGCGgcgccgcccGCGGcCg--CGGCgCCCg -3'
miRNA:   3'- -GGCGUCGCaa-------CGCCaGuuaGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 89598 0.68 0.825667
Target:  5'- gCCGCGGUGaacgcgcugcGCGG-CA--CGGCCCCg -3'
miRNA:   3'- -GGCGUCGCaa--------CGCCaGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 49383 0.68 0.824817
Target:  5'- gCCGCugcccccGGCGUUGCcGUCAuggCGgGCUCCg -3'
miRNA:   3'- -GGCG-------UCGCAACGcCAGUua-GU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 48223 0.68 0.840658
Target:  5'- gCGCAGCGccgccaccaugGC-GUCGAUCAGCuggCCCu -3'
miRNA:   3'- gGCGUCGCaa---------CGcCAGUUAGUCG---GGG- -5'
6354 5' -55.7 NC_001847.1 + 483 0.68 0.825667
Target:  5'- -aGCAGCGgcgGCGG-CGGggCGGCCgCg -3'
miRNA:   3'- ggCGUCGCaa-CGCCaGUUa-GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 109750 0.68 0.799432
Target:  5'- cCCGCAGUGcuuccGCGGUCccccUCcGCCCg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCAGuu--AGuCGGGg -5'
6354 5' -55.7 NC_001847.1 + 1256 0.68 0.825667
Target:  5'- gCCGCAGCGgcGCGc-CG---AGCCCCc -3'
miRNA:   3'- -GGCGUCGCaaCGCcaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 27951 0.68 0.834068
Target:  5'- gCCGCGGCGcgcgcgcucGCGGUCGcgguggaggCGGCCgCg -3'
miRNA:   3'- -GGCGUCGCaa-------CGCCAGUua-------GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 995 0.68 0.825667
Target:  5'- gCCGCGGCG--GCGG-CAcgC-GCUCCa -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 37585 0.68 0.799432
Target:  5'- gCCGCuGCGgcugcgGCGGcCGGgggcCGGCCCg -3'
miRNA:   3'- -GGCGuCGCaa----CGCCaGUUa---GUCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.