miRNA display CGI


Results 81 - 100 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 98254 0.7 0.743104
Target:  5'- -gGCGGCGggGCagcguaGUCGccagCAGCCCCg -3'
miRNA:   3'- ggCGUCGCaaCGc-----CAGUua--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 14185 0.7 0.70348
Target:  5'- aCGCGGCGcUG-GGUCcgcccacAUCAGCCaCCa -3'
miRNA:   3'- gGCGUCGCaACgCCAGu------UAGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 6937 0.7 0.6934
Target:  5'- cCCGCAGUGcuuccGCGGUCccccUCcGCCCUg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCAGuu--AGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 130149 0.7 0.733321
Target:  5'- gCCGCcGCGcuuugccGCGGcCGccgCAGCCCCa -3'
miRNA:   3'- -GGCGuCGCaa-----CGCCaGUua-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 14201 0.7 0.743104
Target:  5'- -gGCGGCGgggcugGCGGUCAGgcCGGCCg- -3'
miRNA:   3'- ggCGUCGCaa----CGCCAGUUa-GUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 29455 0.7 0.6934
Target:  5'- gCGCGGCGcgGCGGcCcgcgcGUCGGCCUg -3'
miRNA:   3'- gGCGUCGCaaCGCCaGu----UAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 115343 0.7 0.70348
Target:  5'- gCCGCuGGCGUUGaCGuugacGUCGAcgugCAGCCCUu -3'
miRNA:   3'- -GGCG-UCGCAAC-GC-----CAGUUa---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 120234 0.7 0.731354
Target:  5'- aUCGCGGCGagGCaGUCGGccugcgcgcggaCGGCCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGcCAGUUa-----------GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 92660 0.7 0.6934
Target:  5'- cCCGCAGCGcuuCGG-CGcgCcGCCCCa -3'
miRNA:   3'- -GGCGUCGCaacGCCaGUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 14561 0.7 0.70348
Target:  5'- gCCGCAGCGcgggugcugGCGGgCGcgCGGCUCUc -3'
miRNA:   3'- -GGCGUCGCaa-------CGCCaGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 66511 0.7 0.712501
Target:  5'- gCGCGGUGgaggcgcgccgccUUGCGGUCcc-CGGCCCg -3'
miRNA:   3'- gGCGUCGC-------------AACGCCAGuuaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 82892 0.7 0.7135
Target:  5'- gCCGCAGCcaagccGCGG-CGcgCGGCgCCCg -3'
miRNA:   3'- -GGCGUCGcaa---CGCCaGUuaGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 42565 0.7 0.70348
Target:  5'- gCCGCguccuccucGGCGgcGCGGUUGAUCaAGCUCa -3'
miRNA:   3'- -GGCG---------UCGCaaCGCCAGUUAG-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 78330 0.7 0.70348
Target:  5'- gCCGCgggcccggcuugGGCGccGCGGcggCGAaCAGCCCCu -3'
miRNA:   3'- -GGCG------------UCGCaaCGCCa--GUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 118403 0.7 0.712501
Target:  5'- cUCGuCAGCGUcguggccgucgccUGCGGUC--UCGGCgCCg -3'
miRNA:   3'- -GGC-GUCGCA-------------ACGCCAGuuAGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 86626 0.7 0.7135
Target:  5'- gCCGCguaAGCGUguggGCGGgcCGcgCcGCCCCg -3'
miRNA:   3'- -GGCG---UCGCAa---CGCCa-GUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 64521 0.7 0.730369
Target:  5'- gCGCAGCGccUUGCccaucGUUAGcgccgucaccaaguUCAGCCCCg -3'
miRNA:   3'- gGCGUCGC--AACGc----CAGUU--------------AGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 27336 0.7 0.733321
Target:  5'- gCCGCcGCGcuuugccGCGGcCGccgCAGCCCCa -3'
miRNA:   3'- -GGCGuCGCaa-----CGCCaGUua-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 65502 0.7 0.733321
Target:  5'- gCGCGGUGUgggGCGGcgcgcgCAGUgCGGCCgCCc -3'
miRNA:   3'- gGCGUCGCAa--CGCCa-----GUUA-GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 29331 0.7 0.733321
Target:  5'- aCGCGGUGgagcgcgcGCGGcuccagCGcgCGGCCCCg -3'
miRNA:   3'- gGCGUCGCaa------CGCCa-----GUuaGUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.