Results 101 - 120 of 339 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6354 | 5' | -55.7 | NC_001847.1 | + | 116718 | 0.7 | 0.72345 |
Target: 5'- gCCGCGGCGcacGUGGcCAA--GGCCCUg -3' miRNA: 3'- -GGCGUCGCaa-CGCCaGUUagUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 27336 | 0.7 | 0.733321 |
Target: 5'- gCCGCcGCGcuuugccGCGGcCGccgCAGCCCCa -3' miRNA: 3'- -GGCGuCGCaa-----CGCCaGUua-GUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 29331 | 0.7 | 0.733321 |
Target: 5'- aCGCGGUGgagcgcgcGCGGcuccagCGcgCGGCCCCg -3' miRNA: 3'- gGCGUCGCaa------CGCCa-----GUuaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 134194 | 0.69 | 0.781169 |
Target: 5'- gCGCAGCGUggaGCGGcgCGcgCGGgCCg -3' miRNA: 3'- gGCGUCGCAa--CGCCa-GUuaGUCgGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 92538 | 0.69 | 0.781169 |
Target: 5'- uCCGCGGCGgcGCcGUCccuGUCAccacCCCCg -3' miRNA: 3'- -GGCGUCGCaaCGcCAGu--UAGUc---GGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 29408 | 0.69 | 0.781169 |
Target: 5'- gCCGCgcuGGCGgcGCGGaCcg-UGGCCCCg -3' miRNA: 3'- -GGCG---UCGCaaCGCCaGuuaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 62316 | 0.69 | 0.771832 |
Target: 5'- uCCGUGGCGaaGCGGUCuuGUCgcacgaccgugAGCCCg -3' miRNA: 3'- -GGCGUCGCaaCGCCAGu-UAG-----------UCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 29225 | 0.69 | 0.781169 |
Target: 5'- gCCGCGGCGggccGCGGcCugcCGGCCgCg -3' miRNA: 3'- -GGCGUCGCaa--CGCCaGuuaGUCGGgG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 98591 | 0.69 | 0.771832 |
Target: 5'- gCGCGGCGccaGCGcGUCAAUCuccgaauccGCCUCg -3' miRNA: 3'- gGCGUCGCaa-CGC-CAGUUAGu--------CGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 124741 | 0.69 | 0.781169 |
Target: 5'- gCGCGGgGgaggGCcGUCAuaaagCGGCCCCg -3' miRNA: 3'- gGCGUCgCaa--CGcCAGUua---GUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 47452 | 0.69 | 0.790372 |
Target: 5'- gCCGCcGCGgcGCcG-CAG-CAGCCCCa -3' miRNA: 3'- -GGCGuCGCaaCGcCaGUUaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 64193 | 0.69 | 0.790372 |
Target: 5'- aCCGCGGCGggaacaUGCgcgGGUCGGgguGCCCg -3' miRNA: 3'- -GGCGUCGCa-----ACG---CCAGUUaguCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 118775 | 0.69 | 0.790372 |
Target: 5'- gCGCGGUGUgaGCGG-CAccggCAGCCgCCa -3' miRNA: 3'- gGCGUCGCAa-CGCCaGUua--GUCGG-GG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 21945 | 0.69 | 0.794014 |
Target: 5'- aCCGCGGCucgcgGCGGcaccggggggggcuuUCGGcggCGGCCCCc -3' miRNA: 3'- -GGCGUCGcaa--CGCC---------------AGUUa--GUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 90882 | 0.69 | 0.762369 |
Target: 5'- gCCGgGGcCGUUGCccagucgccGGcgCGcUCAGCCCCa -3' miRNA: 3'- -GGCgUC-GCAACG---------CCa-GUuAGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 79989 | 0.69 | 0.762369 |
Target: 5'- gCCGCuGCGcgGCGGUgAc---GCCCCg -3' miRNA: 3'- -GGCGuCGCaaCGCCAgUuaguCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 95985 | 0.69 | 0.75279 |
Target: 5'- gCCGCGGCugcGCGGccggcagCGAUUuucgAGCCCCa -3' miRNA: 3'- -GGCGUCGcaaCGCCa------GUUAG----UCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 14766 | 0.69 | 0.75279 |
Target: 5'- cCCGCGGCGUgguaGCGcagcagcUCGA-CGGUCCCg -3' miRNA: 3'- -GGCGUCGCAa---CGCc------AGUUaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 101592 | 0.69 | 0.75279 |
Target: 5'- uCCGCGGCGUcUGCcGcCucuUCGGCgCCCg -3' miRNA: 3'- -GGCGUCGCA-ACGcCaGuu-AGUCG-GGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 33333 | 0.69 | 0.771832 |
Target: 5'- -gGCGGCGcgcUGCGuGaCGGUgGGCCCCu -3' miRNA: 3'- ggCGUCGCa--ACGC-CaGUUAgUCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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