miRNA display CGI


Results 121 - 140 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 90780 0.69 0.781169
Target:  5'- gCGCGGCGa-GgGGcccguUCAG-CAGCCCCg -3'
miRNA:   3'- gGCGUCGCaaCgCC-----AGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 19278 0.69 0.781169
Target:  5'- gCGCAGCGUcugUGCGG-CG---GGCCgCCa -3'
miRNA:   3'- gGCGUCGCA---ACGCCaGUuagUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 94226 0.69 0.771832
Target:  5'- cUCGCGGCGggGCGccCGcgCGGCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCcaGUuaGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 65443 0.69 0.771832
Target:  5'- gCCGC-GCGccGCGGacCGAgcgcCGGCCCCg -3'
miRNA:   3'- -GGCGuCGCaaCGCCa-GUUa---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 14603 0.69 0.75279
Target:  5'- gCCGUcuGGCGc-GCGGUCA-UCGGCUCg -3'
miRNA:   3'- -GGCG--UCGCaaCGCCAGUuAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 21945 0.69 0.794014
Target:  5'- aCCGCGGCucgcgGCGGcaccggggggggcuuUCGGcggCGGCCCCc -3'
miRNA:   3'- -GGCGUCGcaa--CGCC---------------AGUUa--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 118775 0.69 0.790372
Target:  5'- gCGCGGUGUgaGCGG-CAccggCAGCCgCCa -3'
miRNA:   3'- gGCGUCGCAa-CGCCaGUua--GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 64193 0.69 0.790372
Target:  5'- aCCGCGGCGggaacaUGCgcgGGUCGGgguGCCCg -3'
miRNA:   3'- -GGCGUCGCa-----ACG---CCAGUUaguCGGGg -5'
6354 5' -55.7 NC_001847.1 + 47452 0.69 0.790372
Target:  5'- gCCGCcGCGgcGCcG-CAG-CAGCCCCa -3'
miRNA:   3'- -GGCGuCGCaaCGcCaGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 134194 0.69 0.781169
Target:  5'- gCGCAGCGUggaGCGGcgCGcgCGGgCCg -3'
miRNA:   3'- gGCGUCGCAa--CGCCa-GUuaGUCgGGg -5'
6354 5' -55.7 NC_001847.1 + 92538 0.69 0.781169
Target:  5'- uCCGCGGCGgcGCcGUCccuGUCAccacCCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGcCAGu--UAGUc---GGGG- -5'
6354 5' -55.7 NC_001847.1 + 62572 0.69 0.789458
Target:  5'- gCCGCGguugcucggcuuuGCGUUugccccGCGG-CGAUC-GCCCCg -3'
miRNA:   3'- -GGCGU-------------CGCAA------CGCCaGUUAGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 134049 0.68 0.811859
Target:  5'- aCGCGGCGUcuccagagucacagGCGGggagcagCGAaCAGCCCg -3'
miRNA:   3'- gGCGUCGCAa-------------CGCCa------GUUaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 127351 0.68 0.80834
Target:  5'- gCCGCGGCaGggGCGG-CGG--GGCCCg -3'
miRNA:   3'- -GGCGUCG-CaaCGCCaGUUagUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 46689 0.68 0.80834
Target:  5'- aCGC-GCGc-GCGGUCGGggcccgCGGCCCa -3'
miRNA:   3'- gGCGuCGCaaCGCCAGUUa-----GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 34131 0.68 0.80834
Target:  5'- gCCGCGGCG--GCGG-CAGUaacuGCCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUUAgu--CGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 31963 0.68 0.80834
Target:  5'- gCGCGGCGc-GCGGggCG---GGCCCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCa-GUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 115815 0.68 0.799432
Target:  5'- gCCGCGGCGcUUGCG-UUAA-CAGCCa- -3'
miRNA:   3'- -GGCGUCGC-AACGCcAGUUaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 37768 0.68 0.799432
Target:  5'- gCGCAGC---GCGuucgCGAUCAGCUCCa -3'
miRNA:   3'- gGCGUCGcaaCGCca--GUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 7118 0.68 0.80834
Target:  5'- gCCGCAGCccaccUUGcCGGUCuu---GCCCCc -3'
miRNA:   3'- -GGCGUCGc----AAC-GCCAGuuaguCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.