Results 141 - 160 of 339 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6354 | 5' | -55.7 | NC_001847.1 | + | 89598 | 0.68 | 0.825667 |
Target: 5'- gCCGCGGUGaacgcgcugcGCGG-CA--CGGCCCCg -3' miRNA: 3'- -GGCGUCGCaa--------CGCCaGUuaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 27951 | 0.68 | 0.834068 |
Target: 5'- gCCGCGGCGcgcgcgcucGCGGUCGcgguggaggCGGCCgCg -3' miRNA: 3'- -GGCGUCGCaa-------CGCCAGUua-------GUCGGgG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 64440 | 0.68 | 0.834068 |
Target: 5'- gUCGUAGUcg-GCGGcCAcggcCAGCCCCg -3' miRNA: 3'- -GGCGUCGcaaCGCCaGUua--GUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 99108 | 0.68 | 0.834068 |
Target: 5'- gCCGC-GCGUagUGCucGUCcgcgcgCAGCCCCa -3' miRNA: 3'- -GGCGuCGCA--ACGc-CAGuua---GUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 104344 | 0.68 | 0.834068 |
Target: 5'- gCCGCGGCGgcagacGCGG-CGgcGUCcGCgCCCg -3' miRNA: 3'- -GGCGUCGCaa----CGCCaGU--UAGuCG-GGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 69505 | 0.68 | 0.817088 |
Target: 5'- aCGCGGcCGUUgGCGGcgCAGccaAGCCCUg -3' miRNA: 3'- gGCGUC-GCAA-CGCCa-GUUag-UCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 132547 | 0.68 | 0.817088 |
Target: 5'- gCGCGGCGggcucgcgUGCGGcCGcggCGGCCgCg -3' miRNA: 3'- gGCGUCGCa-------ACGCCaGUua-GUCGGgG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 31227 | 0.68 | 0.834068 |
Target: 5'- gCCGCGGCGgcgccgcccGCGGcCg--CGGCgCCCg -3' miRNA: 3'- -GGCGUCGCaa-------CGCCaGuuaGUCG-GGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 69145 | 0.68 | 0.834068 |
Target: 5'- gCCGUGGCGUgcccgGCGGUgCAcaUAGCCg- -3' miRNA: 3'- -GGCGUCGCAa----CGCCA-GUuaGUCGGgg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 106667 | 0.68 | 0.834068 |
Target: 5'- gCCGCGGCGUccgcgGCGcGUCGugccacggCGGCCa- -3' miRNA: 3'- -GGCGUCGCAa----CGC-CAGUua------GUCGGgg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 37768 | 0.68 | 0.799432 |
Target: 5'- gCGCAGC---GCGuucgCGAUCAGCUCCa -3' miRNA: 3'- gGCGUCGcaaCGCca--GUUAGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 115815 | 0.68 | 0.799432 |
Target: 5'- gCCGCGGCGcUUGCG-UUAA-CAGCCa- -3' miRNA: 3'- -GGCGUCGC-AACGCcAGUUaGUCGGgg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 7118 | 0.68 | 0.80834 |
Target: 5'- gCCGCAGCccaccUUGcCGGUCuu---GCCCCc -3' miRNA: 3'- -GGCGUCGc----AAC-GCCAGuuaguCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 31963 | 0.68 | 0.80834 |
Target: 5'- gCGCGGCGc-GCGGggCG---GGCCCCg -3' miRNA: 3'- gGCGUCGCaaCGCCa-GUuagUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 34131 | 0.68 | 0.80834 |
Target: 5'- gCCGCGGCG--GCGG-CAGUaacuGCCgCCg -3' miRNA: 3'- -GGCGUCGCaaCGCCaGUUAgu--CGG-GG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 101013 | 0.68 | 0.817088 |
Target: 5'- gCCGCGGCGgccaccGCGG-CAGgcgccgcaGGCUCCg -3' miRNA: 3'- -GGCGUCGCaa----CGCCaGUUag------UCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 46689 | 0.68 | 0.80834 |
Target: 5'- aCGC-GCGc-GCGGUCGGggcccgCGGCCCa -3' miRNA: 3'- gGCGuCGCaaCGCCAGUUa-----GUCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 127351 | 0.68 | 0.80834 |
Target: 5'- gCCGCGGCaGggGCGG-CGG--GGCCCg -3' miRNA: 3'- -GGCGUCG-CaaCGCCaGUUagUCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 134049 | 0.68 | 0.811859 |
Target: 5'- aCGCGGCGUcuccagagucacagGCGGggagcagCGAaCAGCCCg -3' miRNA: 3'- gGCGUCGCAa-------------CGCCa------GUUaGUCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 14155 | 0.68 | 0.834068 |
Target: 5'- gCGCAGCG--GCGGcCGGggCGGCCgCg -3' miRNA: 3'- gGCGUCGCaaCGCCaGUUa-GUCGGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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