Results 101 - 120 of 339 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6354 | 5' | -55.7 | NC_001847.1 | + | 98254 | 0.7 | 0.743104 |
Target: 5'- -gGCGGCGggGCagcguaGUCGccagCAGCCCCg -3' miRNA: 3'- ggCGUCGCaaCGc-----CAGUua--GUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 130255 | 0.7 | 0.743104 |
Target: 5'- uUCGCAGCGgcGCGGg-----GGCCCUg -3' miRNA: 3'- -GGCGUCGCaaCGCCaguuagUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 18950 | 0.7 | 0.744077 |
Target: 5'- gCCGCGGCGUccggGCGG-CGAcgaccagcgcggccgCGGCgCCCg -3' miRNA: 3'- -GGCGUCGCAa---CGCCaGUUa--------------GUCG-GGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 101592 | 0.69 | 0.75279 |
Target: 5'- uCCGCGGCGUcUGCcGcCucuUCGGCgCCCg -3' miRNA: 3'- -GGCGUCGCA-ACGcCaGuu-AGUCG-GGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 100375 | 0.69 | 0.75279 |
Target: 5'- gCCGCGGCc--GCGG-CGcgCAGCCgCg -3' miRNA: 3'- -GGCGUCGcaaCGCCaGUuaGUCGGgG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 95985 | 0.69 | 0.75279 |
Target: 5'- gCCGCGGCugcGCGGccggcagCGAUUuucgAGCCCCa -3' miRNA: 3'- -GGCGUCGcaaCGCCa------GUUAG----UCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 14603 | 0.69 | 0.75279 |
Target: 5'- gCCGUcuGGCGc-GCGGUCA-UCGGCUCg -3' miRNA: 3'- -GGCG--UCGCaaCGCCAGUuAGUCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 14766 | 0.69 | 0.75279 |
Target: 5'- cCCGCGGCGUgguaGCGcagcagcUCGA-CGGUCCCg -3' miRNA: 3'- -GGCGUCGCAa---CGCc------AGUUaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 90882 | 0.69 | 0.762369 |
Target: 5'- gCCGgGGcCGUUGCccagucgccGGcgCGcUCAGCCCCa -3' miRNA: 3'- -GGCgUC-GCAACG---------CCa-GUuAGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 107642 | 0.69 | 0.762369 |
Target: 5'- gCCGCGGCG--GCGGcCGA--GGCCUCu -3' miRNA: 3'- -GGCGUCGCaaCGCCaGUUagUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 79989 | 0.69 | 0.762369 |
Target: 5'- gCCGCuGCGcgGCGGUgAc---GCCCCg -3' miRNA: 3'- -GGCGuCGCaaCGCCAgUuaguCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 62316 | 0.69 | 0.771832 |
Target: 5'- uCCGUGGCGaaGCGGUCuuGUCgcacgaccgugAGCCCg -3' miRNA: 3'- -GGCGUCGCaaCGCCAGu-UAG-----------UCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 98591 | 0.69 | 0.771832 |
Target: 5'- gCGCGGCGccaGCGcGUCAAUCuccgaauccGCCUCg -3' miRNA: 3'- gGCGUCGCaa-CGC-CAGUUAGu--------CGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 33333 | 0.69 | 0.771832 |
Target: 5'- -gGCGGCGcgcUGCGuGaCGGUgGGCCCCu -3' miRNA: 3'- ggCGUCGCa--ACGC-CaGUUAgUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 94226 | 0.69 | 0.771832 |
Target: 5'- cUCGCGGCGggGCGccCGcgCGGCgCCg -3' miRNA: 3'- -GGCGUCGCaaCGCcaGUuaGUCGgGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 65443 | 0.69 | 0.771832 |
Target: 5'- gCCGC-GCGccGCGGacCGAgcgcCGGCCCCg -3' miRNA: 3'- -GGCGuCGCaaCGCCa-GUUa---GUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 17364 | 0.69 | 0.771832 |
Target: 5'- cCCGCAGgGguauUUGUGGau-GUCGGCgCCCa -3' miRNA: 3'- -GGCGUCgC----AACGCCaguUAGUCG-GGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 29408 | 0.69 | 0.781169 |
Target: 5'- gCCGCgcuGGCGgcGCGGaCcg-UGGCCCCg -3' miRNA: 3'- -GGCG---UCGCaaCGCCaGuuaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 29225 | 0.69 | 0.781169 |
Target: 5'- gCCGCGGCGggccGCGGcCugcCGGCCgCg -3' miRNA: 3'- -GGCGUCGCaa--CGCCaGuuaGUCGGgG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 124741 | 0.69 | 0.781169 |
Target: 5'- gCGCGGgGgaggGCcGUCAuaaagCGGCCCCg -3' miRNA: 3'- gGCGUCgCaa--CGcCAGUua---GUCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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