miRNA display CGI


Results 121 - 140 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 119655 0.69 0.781169
Target:  5'- -gGCAGCcggGCGGgagggCAAcggCGGCCCCc -3'
miRNA:   3'- ggCGUCGcaaCGCCa----GUUa--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 90780 0.69 0.781169
Target:  5'- gCGCGGCGa-GgGGcccguUCAG-CAGCCCCg -3'
miRNA:   3'- gGCGUCGCaaCgCC-----AGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 19278 0.69 0.781169
Target:  5'- gCGCAGCGUcugUGCGG-CG---GGCCgCCa -3'
miRNA:   3'- gGCGUCGCA---ACGCCaGUuagUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 29408 0.69 0.781169
Target:  5'- gCCGCgcuGGCGgcGCGGaCcg-UGGCCCCg -3'
miRNA:   3'- -GGCG---UCGCaaCGCCaGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 29225 0.69 0.781169
Target:  5'- gCCGCGGCGggccGCGGcCugcCGGCCgCg -3'
miRNA:   3'- -GGCGUCGCaa--CGCCaGuuaGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 134194 0.69 0.781169
Target:  5'- gCGCAGCGUggaGCGGcgCGcgCGGgCCg -3'
miRNA:   3'- gGCGUCGCAa--CGCCa-GUuaGUCgGGg -5'
6354 5' -55.7 NC_001847.1 + 92538 0.69 0.781169
Target:  5'- uCCGCGGCGgcGCcGUCccuGUCAccacCCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGcCAGu--UAGUc---GGGG- -5'
6354 5' -55.7 NC_001847.1 + 62572 0.69 0.789458
Target:  5'- gCCGCGguugcucggcuuuGCGUUugccccGCGG-CGAUC-GCCCCg -3'
miRNA:   3'- -GGCGU-------------CGCAA------CGCCaGUUAGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 64193 0.69 0.790372
Target:  5'- aCCGCGGCGggaacaUGCgcgGGUCGGgguGCCCg -3'
miRNA:   3'- -GGCGUCGCa-----ACG---CCAGUUaguCGGGg -5'
6354 5' -55.7 NC_001847.1 + 47452 0.69 0.790372
Target:  5'- gCCGCcGCGgcGCcG-CAG-CAGCCCCa -3'
miRNA:   3'- -GGCGuCGCaaCGcCaGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 118775 0.69 0.790372
Target:  5'- gCGCGGUGUgaGCGG-CAccggCAGCCgCCa -3'
miRNA:   3'- gGCGUCGCAa-CGCCaGUua--GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 21945 0.69 0.794014
Target:  5'- aCCGCGGCucgcgGCGGcaccggggggggcuuUCGGcggCGGCCCCc -3'
miRNA:   3'- -GGCGUCGcaa--CGCC---------------AGUUa--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 36701 0.68 0.799432
Target:  5'- -aGCGGCGUgguggagGCGGcuUCGGUC-GCCgCCg -3'
miRNA:   3'- ggCGUCGCAa------CGCC--AGUUAGuCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 37585 0.68 0.799432
Target:  5'- gCCGCuGCGgcugcgGCGGcCGGgggcCGGCCCg -3'
miRNA:   3'- -GGCGuCGCaa----CGCCaGUUa---GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 109750 0.68 0.799432
Target:  5'- cCCGCAGUGcuuccGCGGUCccccUCcGCCCg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCAGuu--AGuCGGGg -5'
6354 5' -55.7 NC_001847.1 + 26554 0.68 0.799432
Target:  5'- gCGC-GCG-UGCGGUgCAGcaaguagcUCAGCCCg -3'
miRNA:   3'- gGCGuCGCaACGCCA-GUU--------AGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 65277 0.68 0.799432
Target:  5'- uCCGCAGCG--GCGGgccuacgUAAUCGGCUa- -3'
miRNA:   3'- -GGCGUCGCaaCGCCa------GUUAGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 115815 0.68 0.799432
Target:  5'- gCCGCGGCGcUUGCG-UUAA-CAGCCa- -3'
miRNA:   3'- -GGCGUCGC-AACGCcAGUUaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 37768 0.68 0.799432
Target:  5'- gCGCAGC---GCGuucgCGAUCAGCUCCa -3'
miRNA:   3'- gGCGUCGcaaCGCca--GUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 6456 0.68 0.799432
Target:  5'- gCGaCGGCGUacGUGGcCAggCAGUCCCg -3'
miRNA:   3'- gGC-GUCGCAa-CGCCaGUuaGUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.