miRNA display CGI


Results 141 - 160 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 134776 0.68 0.80834
Target:  5'- gCGCGGCGc-GCGGggCG---GGCCCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCa-GUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 5476 0.68 0.80834
Target:  5'- uCUGCGGCG--GCGG-CAG-CGGCCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUUaGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 127351 0.68 0.80834
Target:  5'- gCCGCGGCaGggGCGG-CGG--GGCCCg -3'
miRNA:   3'- -GGCGUCG-CaaCGCCaGUUagUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 46689 0.68 0.80834
Target:  5'- aCGC-GCGc-GCGGUCGGggcccgCGGCCCa -3'
miRNA:   3'- gGCGuCGCaaCGCCAGUUa-----GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 34131 0.68 0.80834
Target:  5'- gCCGCGGCG--GCGG-CAGUaacuGCCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUUAgu--CGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 31963 0.68 0.80834
Target:  5'- gCGCGGCGc-GCGGggCG---GGCCCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCa-GUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 7118 0.68 0.80834
Target:  5'- gCCGCAGCccaccUUGcCGGUCuu---GCCCCc -3'
miRNA:   3'- -GGCGUCGc----AAC-GCCAGuuaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 109931 0.68 0.80834
Target:  5'- gCCGCAGCccaccUUGcCGGUCuu---GCCCCc -3'
miRNA:   3'- -GGCGUCGc----AAC-GCCAGuuaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 116729 0.68 0.80834
Target:  5'- cCCGCGcGCGcUGU--UCGA-CAGCCCCg -3'
miRNA:   3'- -GGCGU-CGCaACGccAGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 134049 0.68 0.811859
Target:  5'- aCGCGGCGUcuccagagucacagGCGGggagcagCGAaCAGCCCg -3'
miRNA:   3'- gGCGUCGCAa-------------CGCCa------GUUaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 77902 0.68 0.814481
Target:  5'- gCGCGGCG--GCGGUgGcgCaccucucggcgacgAGCCCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCAgUuaG--------------UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 101013 0.68 0.817088
Target:  5'- gCCGCGGCGgccaccGCGG-CAGgcgccgcaGGCUCCg -3'
miRNA:   3'- -GGCGUCGCaa----CGCCaGUUag------UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 14804 0.68 0.817088
Target:  5'- aCCGCAGCG--GCGGagCugcgCGGCgCCCu -3'
miRNA:   3'- -GGCGUCGCaaCGCCa-Guua-GUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 69505 0.68 0.817088
Target:  5'- aCGCGGcCGUUgGCGGcgCAGccaAGCCCUg -3'
miRNA:   3'- gGCGUC-GCAA-CGCCa-GUUag-UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 132547 0.68 0.817088
Target:  5'- gCGCGGCGggcucgcgUGCGGcCGcggCGGCCgCg -3'
miRNA:   3'- gGCGUCGCa-------ACGCCaGUua-GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 86932 0.68 0.817088
Target:  5'- -gGCGGCGcUGCGcUCc-UCGGCCCUg -3'
miRNA:   3'- ggCGUCGCaACGCcAGuuAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 88302 0.68 0.817088
Target:  5'- gCGCcGCGgggGCGGUCGAcuuuugcgcgcuUUAGCCgCg -3'
miRNA:   3'- gGCGuCGCaa-CGCCAGUU------------AGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 76565 0.68 0.817088
Target:  5'- aCGCAGCcg-GCGG-Cc--CGGCCCCc -3'
miRNA:   3'- gGCGUCGcaaCGCCaGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 3827 0.68 0.817088
Target:  5'- gCCGCgAGCGUgGCGuuguUCGcgCcGCCCCa -3'
miRNA:   3'- -GGCG-UCGCAaCGCc---AGUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 82639 0.68 0.817088
Target:  5'- gCGCGGCcgcGCGcUCcGUCAGCUCCa -3'
miRNA:   3'- gGCGUCGcaaCGCcAGuUAGUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.