miRNA display CGI


Results 141 - 160 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 55713 0.67 0.847925
Target:  5'- gCGCgagggggcgacagAGCGggcacgGCGGUCcuaguacgcgcUCAGCCCCa -3'
miRNA:   3'- gGCG-------------UCGCaa----CGCCAGuu---------AGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 61327 0.68 0.84552
Target:  5'- gCGgGGCGggGCGGgcgCGccuagcccaccggcaGgCAGCCCCg -3'
miRNA:   3'- gGCgUCGCaaCGCCa--GU---------------UaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 43901 0.68 0.842286
Target:  5'- gCGCcGCG-UGCGGcugCAggCGGaCCCCg -3'
miRNA:   3'- gGCGuCGCaACGCCa--GUuaGUC-GGGG- -5'
6354 5' -55.7 NC_001847.1 + 77073 0.68 0.842286
Target:  5'- gCUGCGGCGcgcgcGCGcGcCAAUCGGCggCCCg -3'
miRNA:   3'- -GGCGUCGCaa---CGC-CaGUUAGUCG--GGG- -5'
6354 5' -55.7 NC_001847.1 + 87443 0.68 0.842286
Target:  5'- gCUGCuGCGc-GCGcUCAA-CGGCCCCg -3'
miRNA:   3'- -GGCGuCGCaaCGCcAGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 83880 0.68 0.842286
Target:  5'- gCCGCGGCGcUGCaucucGUCAcuuucAUCGGCCg- -3'
miRNA:   3'- -GGCGUCGCaACGc----CAGU-----UAGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 20071 0.68 0.842286
Target:  5'- -aGCGGCGUgGCGGcucccgCGGcgCGGCCCg -3'
miRNA:   3'- ggCGUCGCAaCGCCa-----GUUa-GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 101338 0.68 0.842286
Target:  5'- gCCGCuccAGCGcgccggGCGccgCGcgCAGCCCCg -3'
miRNA:   3'- -GGCG---UCGCaa----CGCca-GUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 79604 0.68 0.842286
Target:  5'- gCGCcgggGGCGUUGUcGcCGGUC-GCCCCg -3'
miRNA:   3'- gGCG----UCGCAACGcCaGUUAGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 93688 0.68 0.842286
Target:  5'- gUGCAGCucucGUUcCGGUUcAUgGGCCCCg -3'
miRNA:   3'- gGCGUCG----CAAcGCCAGuUAgUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 48223 0.68 0.840658
Target:  5'- gCGCAGCGccgccaccaugGC-GUCGAUCAGCuggCCCu -3'
miRNA:   3'- gGCGUCGCaa---------CGcCAGUUAGUCG---GGG- -5'
6354 5' -55.7 NC_001847.1 + 30566 0.68 0.837378
Target:  5'- uCCGCGGCGUcuggGacgaGGUCcagGAggaccgccgcguagCGGCCCCg -3'
miRNA:   3'- -GGCGUCGCAa---Cg---CCAG---UUa-------------GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 52593 0.68 0.837378
Target:  5'- aCCGCGcGCGgugcgcuucgguagUGCGGUCGAa-GGCCgCg -3'
miRNA:   3'- -GGCGU-CGCa-------------ACGCCAGUUagUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 99108 0.68 0.834068
Target:  5'- gCCGC-GCGUagUGCucGUCcgcgcgCAGCCCCa -3'
miRNA:   3'- -GGCGuCGCA--ACGc-CAGuua---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 104344 0.68 0.834068
Target:  5'- gCCGCGGCGgcagacGCGG-CGgcGUCcGCgCCCg -3'
miRNA:   3'- -GGCGUCGCaa----CGCCaGU--UAGuCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 14155 0.68 0.834068
Target:  5'- gCGCAGCG--GCGGcCGGggCGGCCgCg -3'
miRNA:   3'- gGCGUCGCaaCGCCaGUUa-GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 27951 0.68 0.834068
Target:  5'- gCCGCGGCGcgcgcgcucGCGGUCGcgguggaggCGGCCgCg -3'
miRNA:   3'- -GGCGUCGCaa-------CGCCAGUua-------GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 31227 0.68 0.834068
Target:  5'- gCCGCGGCGgcgccgcccGCGGcCg--CGGCgCCCg -3'
miRNA:   3'- -GGCGUCGCaa-------CGCCaGuuaGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 69145 0.68 0.834068
Target:  5'- gCCGUGGCGUgcccgGCGGUgCAcaUAGCCg- -3'
miRNA:   3'- -GGCGUCGCAa----CGCCA-GUuaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 106667 0.68 0.834068
Target:  5'- gCCGCGGCGUccgcgGCGcGUCGugccacggCGGCCa- -3'
miRNA:   3'- -GGCGUCGCAa----CGC-CAGUua------GUCGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.