miRNA display CGI


Results 101 - 120 of 339 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 37768 0.68 0.799432
Target:  5'- gCGCAGC---GCGuucgCGAUCAGCUCCa -3'
miRNA:   3'- gGCGUCGcaaCGCca--GUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 38076 0.78 0.321255
Target:  5'- gCGCGGCGgccgccGCGGUCGGggaaagCAGCCCg -3'
miRNA:   3'- gGCGUCGCaa----CGCCAGUUa-----GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 39601 0.72 0.601409
Target:  5'- gCUGCuGCGgcGCGGcCc--CAGCCCCa -3'
miRNA:   3'- -GGCGuCGCaaCGCCaGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 39773 0.72 0.611643
Target:  5'- -aGcCGGCGgcGCGGUCcgccgcCAGCCCCc -3'
miRNA:   3'- ggC-GUCGCaaCGCCAGuua---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 41430 0.68 0.834068
Target:  5'- gCCGguGCGaUGCGaGUCGccggGGCCCa -3'
miRNA:   3'- -GGCguCGCaACGC-CAGUuag-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 42069 0.67 0.880364
Target:  5'- gCUGguGcCGcUGCGG-CGcAUCGGCCUCg -3'
miRNA:   3'- -GGCguC-GCaACGCCaGU-UAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 42565 0.7 0.70348
Target:  5'- gCCGCguccuccucGGCGgcGCGGUUGAUCaAGCUCa -3'
miRNA:   3'- -GGCG---------UCGCaaCGCCAGUUAG-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 43126 0.66 0.900597
Target:  5'- cCCGCAGaCGgcGCGGgcccgCGGgcgCuGCgCCCg -3'
miRNA:   3'- -GGCGUC-GCaaCGCCa----GUUa--GuCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 43454 0.67 0.880364
Target:  5'- cCCGgGGCGacggcGCGGUCGccgagcgcgcgAUCGcGUCCCg -3'
miRNA:   3'- -GGCgUCGCaa---CGCCAGU-----------UAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 43901 0.68 0.842286
Target:  5'- gCGCcGCG-UGCGGcugCAggCGGaCCCCg -3'
miRNA:   3'- gGCGuCGCaACGCCa--GUuaGUC-GGGG- -5'
6354 5' -55.7 NC_001847.1 + 44038 0.67 0.880364
Target:  5'- gCUGCAGCGaggcGCGcGUCGGggCcGCCCUg -3'
miRNA:   3'- -GGCGUCGCaa--CGC-CAGUUa-GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 44301 0.67 0.850312
Target:  5'- gCGCGGCGcgGCGGgc---CAGCgCCa -3'
miRNA:   3'- gGCGUCGCaaCGCCaguuaGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 45132 0.66 0.899312
Target:  5'- gUGCAGCucggcgccuucUGCGGggug-CAGCCCCg -3'
miRNA:   3'- gGCGUCGca---------ACGCCaguuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 45257 0.66 0.900597
Target:  5'- gCCGcCGGCGUgagcGCGG-CGA--AGCCCg -3'
miRNA:   3'- -GGC-GUCGCAa---CGCCaGUUagUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 46339 0.66 0.918732
Target:  5'- cCCGCGgggccGCGUcgGCGGcaUCGGggGGCUCCu -3'
miRNA:   3'- -GGCGU-----CGCAa-CGCC--AGUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 46689 0.68 0.80834
Target:  5'- aCGC-GCGc-GCGGUCGGggcccgCGGCCCa -3'
miRNA:   3'- gGCGuCGCaaCGCCAGUUa-----GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 47059 0.73 0.530793
Target:  5'- gUCGCGGcCGgcGCGGUCGAUgcCAGCCa- -3'
miRNA:   3'- -GGCGUC-GCaaCGCCAGUUA--GUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 47207 0.67 0.87317
Target:  5'- aCGCucaccGCGUgcGCGGcCGcgccCAGCCCCa -3'
miRNA:   3'- gGCGu----CGCAa-CGCCaGUua--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 47422 0.67 0.87317
Target:  5'- -gGCGGCGUcUGCGacGUCG-UCGGCUUCg -3'
miRNA:   3'- ggCGUCGCA-ACGC--CAGUuAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 47452 0.69 0.790372
Target:  5'- gCCGCcGCGgcGCcG-CAG-CAGCCCCa -3'
miRNA:   3'- -GGCGuCGCaaCGcCaGUUaGUCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.