miRNA display CGI


Results 121 - 140 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 48223 0.68 0.840658
Target:  5'- gCGCAGCGccgccaccaugGC-GUCGAUCAGCuggCCCu -3'
miRNA:   3'- gGCGUCGCaa---------CGcCAGUUAGUCG---GGG- -5'
6354 5' -55.7 NC_001847.1 + 48520 0.66 0.900597
Target:  5'- aCGCAGaCGUUGUGGcccgccUCGAggCGcGCCCg -3'
miRNA:   3'- gGCGUC-GCAACGCC------AGUUa-GU-CGGGg -5'
6354 5' -55.7 NC_001847.1 + 48637 0.67 0.850312
Target:  5'- gCCGCGGCG--GCGGggCGccgCcGCCCCc -3'
miRNA:   3'- -GGCGUCGCaaCGCCa-GUua-GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 49383 0.68 0.824817
Target:  5'- gCCGCugcccccGGCGUUGCcGUCAuggCGgGCUCCg -3'
miRNA:   3'- -GGCG-------UCGCAACGcCAGUua-GU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 50512 0.67 0.87317
Target:  5'- gCGCAGCaGccGCGG-CAu--GGCCCCg -3'
miRNA:   3'- gGCGUCG-CaaCGCCaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 50801 0.67 0.880364
Target:  5'- cUCGCGGCGcUGCGGcCGGUaCGGUuuUa -3'
miRNA:   3'- -GGCGUCGCaACGCCaGUUA-GUCGggG- -5'
6354 5' -55.7 NC_001847.1 + 50918 0.66 0.918732
Target:  5'- cCCGCGGCGgccccgGCcGUCAG--GGCCUg -3'
miRNA:   3'- -GGCGUCGCaa----CGcCAGUUagUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 52511 0.67 0.850312
Target:  5'- aCGgAGCGc-GCGGcCGcgCGGCCCg -3'
miRNA:   3'- gGCgUCGCaaCGCCaGUuaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 52593 0.68 0.837378
Target:  5'- aCCGCGcGCGgugcgcuucgguagUGCGGUCGAa-GGCCgCg -3'
miRNA:   3'- -GGCGU-CGCa-------------ACGCCAGUUagUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 53086 0.67 0.86576
Target:  5'- cCCGgcuCAGCGUucgGCGGggCGG-CGGCCCg -3'
miRNA:   3'- -GGC---GUCGCAa--CGCCa-GUUaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 53308 0.66 0.912924
Target:  5'- gCCGcCAGUGcgGCGGgcgaCAGgacggCGcGCCCCg -3'
miRNA:   3'- -GGC-GUCGCaaCGCCa---GUUa----GU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 53589 0.67 0.87317
Target:  5'- gCGCAGCugcGCGGggccggCGAgcUCGGCCgCCg -3'
miRNA:   3'- gGCGUCGcaaCGCCa-----GUU--AGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 53742 0.71 0.642406
Target:  5'- gCGCGGCGUagcGCGGaUCcggCGGCCCg -3'
miRNA:   3'- gGCGUCGCAa--CGCC-AGuuaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 53772 0.67 0.880364
Target:  5'- -gGCGGCGaggGCGG-CAGcaccgCAGCCgCCg -3'
miRNA:   3'- ggCGUCGCaa-CGCCaGUUa----GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 53881 0.71 0.646507
Target:  5'- gCCGCGGgGgcgGCGGgccccccguccucgCGA-CGGCCCCg -3'
miRNA:   3'- -GGCGUCgCaa-CGCCa-------------GUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 54396 0.7 0.6934
Target:  5'- gCCGCgGGCGagGCGGgcgccgccgCGGUUGGCCUCg -3'
miRNA:   3'- -GGCG-UCGCaaCGCCa--------GUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 54536 0.75 0.421654
Target:  5'- aCCGCGGCGgggGCGGgggcggggaagacgCAGUCGcGCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCa-------------GUUAGU-CGGGg -5'
6354 5' -55.7 NC_001847.1 + 54556 0.68 0.834068
Target:  5'- gCgGgGGCGgcGCGGagGAcgaCGGCCCCg -3'
miRNA:   3'- -GgCgUCGCaaCGCCagUUa--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 55713 0.67 0.847925
Target:  5'- gCGCgagggggcgacagAGCGggcacgGCGGUCcuaguacgcgcUCAGCCCCa -3'
miRNA:   3'- gGCG-------------UCGCaa----CGCCAGuu---------AGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 56097 0.66 0.894081
Target:  5'- gCGCcGCGUUaaGCGcGUCGAUguGCCa- -3'
miRNA:   3'- gGCGuCGCAA--CGC-CAGUUAguCGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.