miRNA display CGI


Results 141 - 160 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 56141 0.66 0.900597
Target:  5'- gCGCAGCcuccGggGUGGcUCAG-CAGCCgCCc -3'
miRNA:   3'- gGCGUCG----CaaCGCC-AGUUaGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 56750 0.74 0.491782
Target:  5'- cCCGCAGCGgcGgGGUCc-UCGGCCa- -3'
miRNA:   3'- -GGCGUCGCaaCgCCAGuuAGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 58005 0.74 0.488908
Target:  5'- gCGCAgGCGgcgGCGGUCGcgcgcgcgccuugaAgCAGCCCCg -3'
miRNA:   3'- gGCGU-CGCaa-CGCCAGU--------------UaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 58173 0.71 0.662887
Target:  5'- aCCGCGGCGggGUcGUCAA--AGCCgCCu -3'
miRNA:   3'- -GGCGUCGCaaCGcCAGUUagUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 58290 0.67 0.850312
Target:  5'- gCCGCGGCGacgGCGG-CGGcCGGCaggCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCaGUUaGUCGg--GG- -5'
6354 5' -55.7 NC_001847.1 + 58382 0.66 0.894081
Target:  5'- cUCGUAGCGggugccgGCGGgCAG-CAGCUCUu -3'
miRNA:   3'- -GGCGUCGCaa-----CGCCaGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 58459 0.66 0.887336
Target:  5'- gCCGCAGCGccGCgcgcgugaacgGGUCGAaaaaGGCgCCCu -3'
miRNA:   3'- -GGCGUCGCaaCG-----------CCAGUUag--UCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 59320 0.67 0.86576
Target:  5'- gCGCGGCGccgGCGGcgcCGuacCAGCCCg -3'
miRNA:   3'- gGCGUCGCaa-CGCCa--GUua-GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 59403 0.7 0.70348
Target:  5'- gCCGgcggaGGCGcgGCGGUC-AUCGcugcGCCCCg -3'
miRNA:   3'- -GGCg----UCGCaaCGCCAGuUAGU----CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 60294 0.66 0.894081
Target:  5'- uCgGCAGCGggGCGG-CGGgcggCAGCgCg -3'
miRNA:   3'- -GgCGUCGCaaCGCCaGUUa---GUCGgGg -5'
6354 5' -55.7 NC_001847.1 + 60648 0.66 0.894081
Target:  5'- gCGCGGCGcaggcGCGGcugcugcaUCAAcacgccCAGCCCCc -3'
miRNA:   3'- gGCGUCGCaa---CGCC--------AGUUa-----GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 60743 0.72 0.621892
Target:  5'- cCCGCGcgcGCGcgGCGGcCGcgCGGUCCCc -3'
miRNA:   3'- -GGCGU---CGCaaCGCCaGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 60748 0.74 0.501416
Target:  5'- gCGCGGCGcggugGCGGUUuucCAGCUCCa -3'
miRNA:   3'- gGCGUCGCaa---CGCCAGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 60918 0.68 0.825667
Target:  5'- aCCGCGucccCGUUGCagaGGUCAAagGGgCCCg -3'
miRNA:   3'- -GGCGUc---GCAACG---CCAGUUagUCgGGG- -5'
6354 5' -55.7 NC_001847.1 + 61045 0.8 0.236376
Target:  5'- aCCgGCAGCGguacGCGGcC-AUCAGCCCCa -3'
miRNA:   3'- -GG-CGUCGCaa--CGCCaGuUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 61327 0.68 0.84552
Target:  5'- gCGgGGCGggGCGGgcgCGccuagcccaccggcaGgCAGCCCCg -3'
miRNA:   3'- gGCgUCGCaaCGCCa--GU---------------UaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 61454 0.78 0.321255
Target:  5'- gCGCGGCGagGCGGUCGcgCAGCagcgCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCAGUuaGUCGg---GG- -5'
6354 5' -55.7 NC_001847.1 + 61974 0.7 0.70348
Target:  5'- cCCGcCGGCGcgGCGGgcaUAAUgGGCCCg -3'
miRNA:   3'- -GGC-GUCGCaaCGCCa--GUUAgUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 62316 0.69 0.771832
Target:  5'- uCCGUGGCGaaGCGGUCuuGUCgcacgaccgugAGCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCAGu-UAG-----------UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 62500 0.7 0.7135
Target:  5'- gCCGCGGgGUgGCGGcCA--CAGCCgCCc -3'
miRNA:   3'- -GGCGUCgCAaCGCCaGUuaGUCGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.