miRNA display CGI


Results 161 - 180 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 62572 0.69 0.789458
Target:  5'- gCCGCGguugcucggcuuuGCGUUugccccGCGG-CGAUC-GCCCCg -3'
miRNA:   3'- -GGCGU-------------CGCAA------CGCCaGUUAGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 62717 0.66 0.918732
Target:  5'- gCGCAuguuccGCGUUGCGGcCGuggCcGUCCCc -3'
miRNA:   3'- gGCGU------CGCAACGCCaGUua-GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 63383 0.68 0.825667
Target:  5'- cUCGCGGCGUcUGCGcGaugCGccgCAGCCUCg -3'
miRNA:   3'- -GGCGUCGCA-ACGC-Ca--GUua-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 63465 0.66 0.899956
Target:  5'- aCGCGGCGggccuggUUGCguacuaccaGGcCAGguucgCGGCCCCg -3'
miRNA:   3'- gGCGUCGC-------AACG---------CCaGUUa----GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 64193 0.69 0.790372
Target:  5'- aCCGCGGCGggaacaUGCgcgGGUCGGgguGCCCg -3'
miRNA:   3'- -GGCGUCGCa-----ACG---CCAGUUaguCGGGg -5'
6354 5' -55.7 NC_001847.1 + 64253 0.74 0.482234
Target:  5'- gCCGCgaguAGCGguccgcagGCGGUUuGUaCAGCCCCa -3'
miRNA:   3'- -GGCG----UCGCaa------CGCCAGuUA-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 64440 0.68 0.834068
Target:  5'- gUCGUAGUcg-GCGGcCAcggcCAGCCCCg -3'
miRNA:   3'- -GGCGUCGcaaCGCCaGUua--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 64521 0.7 0.730369
Target:  5'- gCGCAGCGccUUGCccaucGUUAGcgccgucaccaaguUCAGCCCCg -3'
miRNA:   3'- gGCGUCGC--AACGc----CAGUU--------------AGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 65113 0.66 0.894081
Target:  5'- gCCGCGGCucggcugGCGGUgGGgcUCGGCUUCc -3'
miRNA:   3'- -GGCGUCGcaa----CGCCAgUU--AGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 65277 0.68 0.799432
Target:  5'- uCCGCAGCG--GCGGgccuacgUAAUCGGCUa- -3'
miRNA:   3'- -GGCGUCGCaaCGCCa------GUUAGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 65443 0.69 0.771832
Target:  5'- gCCGC-GCGccGCGGacCGAgcgcCGGCCCCg -3'
miRNA:   3'- -GGCGuCGCaaCGCCa-GUUa---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 65502 0.7 0.733321
Target:  5'- gCGCGGUGUgggGCGGcgcgcgCAGUgCGGCCgCCc -3'
miRNA:   3'- gGCGUCGCAa--CGCCa-----GUUA-GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 65985 0.67 0.858139
Target:  5'- -gGCAGCag-GCGGgau-UCAGCCCg -3'
miRNA:   3'- ggCGUCGcaaCGCCaguuAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 66331 0.66 0.911734
Target:  5'- cCUGCGGCGgguggggcGCGGgcgccgccguggCGAUCGuCCCCg -3'
miRNA:   3'- -GGCGUCGCaa------CGCCa-----------GUUAGUcGGGG- -5'
6354 5' -55.7 NC_001847.1 + 66511 0.7 0.712501
Target:  5'- gCGCGGUGgaggcgcgccgccUUGCGGUCcc-CGGCCCg -3'
miRNA:   3'- gGCGUCGC-------------AACGCCAGuuaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 66877 0.66 0.894081
Target:  5'- cCCGCucGCGc-GCGGguacucGUCGGUCCCg -3'
miRNA:   3'- -GGCGu-CGCaaCGCCagu---UAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 67059 0.67 0.880364
Target:  5'- aCCGCucGCGccGCGG-CGuUC-GCCCCg -3'
miRNA:   3'- -GGCGu-CGCaaCGCCaGUuAGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 67216 0.66 0.917015
Target:  5'- -aGCGGCGggcgcGCGGUCGAacgccgugagcuguUCcGCCuCCa -3'
miRNA:   3'- ggCGUCGCaa---CGCCAGUU--------------AGuCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 67478 0.67 0.87317
Target:  5'- gCCGCGGCGUcgucGCaGUCAcaGUCguaaucguAGCCgCCg -3'
miRNA:   3'- -GGCGUCGCAa---CGcCAGU--UAG--------UCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 67544 0.67 0.880364
Target:  5'- uCCGCAgGCGcggGCGGUUcucccaGAUCGGCgCg -3'
miRNA:   3'- -GGCGU-CGCaa-CGCCAG------UUAGUCGgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.