miRNA display CGI


Results 101 - 120 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 96036 0.7 0.72345
Target:  5'- gCCGCcGCGUUGCGcuaagCGcUCccauGGCCCCa -3'
miRNA:   3'- -GGCGuCGCAACGCca---GUuAG----UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 95985 0.69 0.75279
Target:  5'- gCCGCGGCugcGCGGccggcagCGAUUuucgAGCCCCa -3'
miRNA:   3'- -GGCGUCGcaaCGCCa------GUUAG----UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 94613 0.71 0.673095
Target:  5'- gCCGCAGCacGUcGCGcGUCGcgcgCAGCCgCCg -3'
miRNA:   3'- -GGCGUCG--CAaCGC-CAGUua--GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 94226 0.69 0.771832
Target:  5'- cUCGCGGCGggGCGccCGcgCGGCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCcaGUuaGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 93688 0.68 0.842286
Target:  5'- gUGCAGCucucGUUcCGGUUcAUgGGCCCCg -3'
miRNA:   3'- gGCGUCG----CAAcGCCAGuUAgUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 92660 0.7 0.6934
Target:  5'- cCCGCAGCGcuuCGG-CGcgCcGCCCCa -3'
miRNA:   3'- -GGCGUCGCaacGCCaGUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 92538 0.69 0.781169
Target:  5'- uCCGCGGCGgcGCcGUCccuGUCAccacCCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGcCAGu--UAGUc---GGGG- -5'
6354 5' -55.7 NC_001847.1 + 91873 0.66 0.912924
Target:  5'- gCGCGGCGUcGCaG-CAGgu-GCCCCc -3'
miRNA:   3'- gGCGUCGCAaCGcCaGUUaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 91660 0.67 0.858139
Target:  5'- aCgGCGGCGcgGCGGgacgCGAUCGcGCgCUCg -3'
miRNA:   3'- -GgCGUCGCaaCGCCa---GUUAGU-CG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 90882 0.69 0.762369
Target:  5'- gCCGgGGcCGUUGCccagucgccGGcgCGcUCAGCCCCa -3'
miRNA:   3'- -GGCgUC-GCAACG---------CCa-GUuAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 90780 0.69 0.781169
Target:  5'- gCGCGGCGa-GgGGcccguUCAG-CAGCCCCg -3'
miRNA:   3'- gGCGUCGCaaCgCC-----AGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 90741 0.66 0.887336
Target:  5'- cUCGCGGCGc-GUGGcCG---GGCCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 90473 0.67 0.87317
Target:  5'- uCCGCGGCucgccggucacgGUgcagGCGGggCAG-CAGCCuCCg -3'
miRNA:   3'- -GGCGUCG------------CAa---CGCCa-GUUaGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 90191 0.66 0.900597
Target:  5'- gCUGCuGCGgcGCGccGUCGccCAGCCCg -3'
miRNA:   3'- -GGCGuCGCaaCGC--CAGUuaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 89598 0.68 0.825667
Target:  5'- gCCGCGGUGaacgcgcugcGCGG-CA--CGGCCCCg -3'
miRNA:   3'- -GGCGUCGCaa--------CGCCaGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 88880 0.67 0.850312
Target:  5'- gCGCGGCG--GCGG-CGG-CGGCuCCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCaGUUaGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 88370 0.67 0.880364
Target:  5'- gCGCGGgCGcgGCGGac---CGGCCCCg -3'
miRNA:   3'- gGCGUC-GCaaCGCCaguuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 88302 0.68 0.817088
Target:  5'- gCGCcGCGgggGCGGUCGAcuuuugcgcgcuUUAGCCgCg -3'
miRNA:   3'- gGCGuCGCaa-CGCCAGUU------------AGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 87443 0.68 0.842286
Target:  5'- gCUGCuGCGc-GCGcUCAA-CGGCCCCg -3'
miRNA:   3'- -GGCGuCGCaaCGCcAGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 87297 0.66 0.906878
Target:  5'- cCCGCGGCc--GCGGcCGAUUugcgcgcauuGGCCgCCg -3'
miRNA:   3'- -GGCGUCGcaaCGCCaGUUAG----------UCGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.