miRNA display CGI


Results 121 - 140 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 86932 0.68 0.817088
Target:  5'- -gGCGGCGcUGCGcUCc-UCGGCCCUg -3'
miRNA:   3'- ggCGUCGCaACGCcAGuuAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 86626 0.7 0.7135
Target:  5'- gCCGCguaAGCGUguggGCGGgcCGcgCcGCCCCg -3'
miRNA:   3'- -GGCG---UCGCAa---CGCCa-GUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 86386 0.66 0.912924
Target:  5'- gCCGCGGCG--GCGGgCGcgCGGCUg- -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 85729 0.66 0.906878
Target:  5'- -gGCugGGCGUUaGCuuGG-CcGUCAGCCCCg -3'
miRNA:   3'- ggCG--UCGCAA-CG--CCaGuUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 83880 0.68 0.842286
Target:  5'- gCCGCGGCGcUGCaucucGUCAcuuucAUCGGCCg- -3'
miRNA:   3'- -GGCGUCGCaACGc----CAGU-----UAGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 83506 0.72 0.607547
Target:  5'- gCCGCGGCGcugcgugccuuccUGCGGUCcGUgCGccGCCCCg -3'
miRNA:   3'- -GGCGUCGCa------------ACGCCAGuUA-GU--CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 83264 0.67 0.870232
Target:  5'- gCGCGGCGgggGCGGgcgCAGaggcgcacaccugCGGCCUCc -3'
miRNA:   3'- gGCGUCGCaa-CGCCa--GUUa------------GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 83195 0.72 0.621892
Target:  5'- gCCGCGGgGUcgcGCGG-CcGUCGcGCCCCg -3'
miRNA:   3'- -GGCGUCgCAa--CGCCaGuUAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 82892 0.7 0.7135
Target:  5'- gCCGCAGCcaagccGCGG-CGcgCGGCgCCCg -3'
miRNA:   3'- -GGCGUCGcaa---CGCCaGUuaGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 82639 0.68 0.817088
Target:  5'- gCGCGGCcgcGCGcUCcGUCAGCUCCa -3'
miRNA:   3'- gGCGUCGcaaCGCcAGuUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 82132 0.66 0.906878
Target:  5'- gCGCAGCGgccGCcG-CuGUCGGCUCCg -3'
miRNA:   3'- gGCGUCGCaa-CGcCaGuUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 81858 0.68 0.823111
Target:  5'- -aGCGGCGUgagGCGGaCGcgCGccugggcgcgcagcGCCCCg -3'
miRNA:   3'- ggCGUCGCAa--CGCCaGUuaGU--------------CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 81362 0.67 0.858139
Target:  5'- cUCGCGGCGgcUGCGGUgCug-CcGCCCUc -3'
miRNA:   3'- -GGCGUCGCa-ACGCCA-GuuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 80959 0.71 0.662887
Target:  5'- uCCGCgAGCGc-GCGGUCAAaguGCUCCg -3'
miRNA:   3'- -GGCG-UCGCaaCGCCAGUUaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 79989 0.69 0.762369
Target:  5'- gCCGCuGCGcgGCGGUgAc---GCCCCg -3'
miRNA:   3'- -GGCGuCGCaaCGCCAgUuaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 79677 0.66 0.887336
Target:  5'- -gGCAGCGgcuagcGCGG-CGcgC-GCCCCg -3'
miRNA:   3'- ggCGUCGCaa----CGCCaGUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 79604 0.68 0.842286
Target:  5'- gCGCcgggGGCGUUGUcGcCGGUC-GCCCCg -3'
miRNA:   3'- gGCG----UCGCAACGcCaGUUAGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 79276 0.66 0.906878
Target:  5'- gCGCGGCGaaGCGGUgcCGGUgaaCGGCgCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCA--GUUA---GUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 78956 0.68 0.834068
Target:  5'- cCCGCAGgcugGCGcUCGcgCAGCCUCg -3'
miRNA:   3'- -GGCGUCgcaaCGCcAGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 78330 0.7 0.70348
Target:  5'- gCCGCgggcccggcuugGGCGccGCGGcggCGAaCAGCCCCu -3'
miRNA:   3'- -GGCG------------UCGCaaCGCCa--GUUaGUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.