miRNA display CGI


Results 141 - 160 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 78203 0.67 0.858139
Target:  5'- cUCGCGGCGgcUGCGGUgCAccGUCGuGUUCCc -3'
miRNA:   3'- -GGCGUCGCa-ACGCCA-GU--UAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 78045 0.71 0.642406
Target:  5'- gCGCGGCGgcGCGG-CGGUCcagcgcagcgcuGGCCgCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCaGUUAG------------UCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 77902 0.68 0.814481
Target:  5'- gCGCGGCG--GCGGUgGcgCaccucucggcgacgAGCCCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCAgUuaG--------------UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 77073 0.68 0.842286
Target:  5'- gCUGCGGCGcgcgcGCGcGcCAAUCGGCggCCCg -3'
miRNA:   3'- -GGCGUCGCaa---CGC-CaGUUAGUCG--GGG- -5'
6354 5' -55.7 NC_001847.1 + 76565 0.68 0.817088
Target:  5'- aCGCAGCcg-GCGG-Cc--CGGCCCCc -3'
miRNA:   3'- gGCGUCGcaaCGCCaGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 74615 0.67 0.858139
Target:  5'- uCCGCGGUGUgaGCGGUgccgCGGCCa- -3'
miRNA:   3'- -GGCGUCGCAa-CGCCAguuaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 74311 0.67 0.86576
Target:  5'- gCGCAGCGccGCGGg----C-GCCCCu -3'
miRNA:   3'- gGCGUCGCaaCGCCaguuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 74140 0.66 0.887336
Target:  5'- gCGCGGCGccgaugGCGGccUCGA-CGGCgCCg -3'
miRNA:   3'- gGCGUCGCaa----CGCC--AGUUaGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 73862 0.71 0.652655
Target:  5'- gCCGCGgugcGCGggGCGcGUCAGUUccgccggcGCCCCg -3'
miRNA:   3'- -GGCGU----CGCaaCGC-CAGUUAGu-------CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 73456 0.66 0.918732
Target:  5'- -aGCGGCGccucGcCGGUguA-CAGCCCCu -3'
miRNA:   3'- ggCGUCGCaa--C-GCCAguUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 73183 0.71 0.642406
Target:  5'- aCGCGGCG--GCGG--AGUCGGCCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCagUUAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 72589 0.66 0.918732
Target:  5'- aCCGCGGcCGcgGCGG-CAGaaggggCAGCCgCu -3'
miRNA:   3'- -GGCGUC-GCaaCGCCaGUUa-----GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 72541 0.67 0.858139
Target:  5'- uUCGCGGCGa-GCGGggCGAUC-GCCgCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCa-GUUAGuCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 69755 0.71 0.631123
Target:  5'- cCCGguGCGcgGCGGUCAagugcgcgcgaaaGUCAGCgggCUCg -3'
miRNA:   3'- -GGCguCGCaaCGCCAGU-------------UAGUCG---GGG- -5'
6354 5' -55.7 NC_001847.1 + 69681 0.66 0.918732
Target:  5'- -gGCAGCGUUgggcGCGGggccggCGcUCGGUCCg -3'
miRNA:   3'- ggCGUCGCAA----CGCCa-----GUuAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 69600 0.66 0.885268
Target:  5'- aCCGCgugaguauaaaacgAGCGgcGCGGcCGggCGGCCgCa -3'
miRNA:   3'- -GGCG--------------UCGCaaCGCCaGUuaGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 69505 0.68 0.817088
Target:  5'- aCGCGGcCGUUgGCGGcgCAGccaAGCCCUg -3'
miRNA:   3'- gGCGUC-GCAA-CGCCa-GUUag-UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 69145 0.68 0.834068
Target:  5'- gCCGUGGCGUgcccgGCGGUgCAcaUAGCCg- -3'
miRNA:   3'- -GGCGUCGCAa----CGCCA-GUuaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 68342 0.71 0.673095
Target:  5'- gCCGCucGGCGUcGUGGUagcCGGUCgugagcacgAGCCCCg -3'
miRNA:   3'- -GGCG--UCGCAaCGCCA---GUUAG---------UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 67544 0.67 0.880364
Target:  5'- uCCGCAgGCGcggGCGGUUcucccaGAUCGGCgCg -3'
miRNA:   3'- -GGCGU-CGCaa-CGCCAG------UUAGUCGgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.