miRNA display CGI


Results 101 - 120 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 108032 0.67 0.858139
Target:  5'- gCCGCGGCGgccgGCGGggcgCGcgCGGCa-- -3'
miRNA:   3'- -GGCGUCGCaa--CGCCa---GUuaGUCGggg -5'
6354 5' -55.7 NC_001847.1 + 83264 0.67 0.870232
Target:  5'- gCGCGGCGgggGCGGgcgCAGaggcgcacaccugCGGCCUCc -3'
miRNA:   3'- gGCGUCGCaa-CGCCa--GUUa------------GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 33701 0.67 0.880364
Target:  5'- cUCGCGGCGcgGCGG-CGcgUGGCCg- -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 134946 0.67 0.880364
Target:  5'- gCGCcgggGGCGgggGCGGgggCGGg-GGCCCCg -3'
miRNA:   3'- gGCG----UCGCaa-CGCCa--GUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 11058 0.66 0.887336
Target:  5'- gCCGCAGCG--GCGG-CAGUUcaccuGCCUg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUUAGu----CGGGg -5'
6354 5' -55.7 NC_001847.1 + 5476 0.68 0.80834
Target:  5'- uCUGCGGCG--GCGG-CAG-CGGCCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUUaGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 37585 0.68 0.799432
Target:  5'- gCCGCuGCGgcugcgGCGGcCGGgggcCGGCCCg -3'
miRNA:   3'- -GGCGuCGCaa----CGCCaGUUa---GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 134244 0.74 0.472776
Target:  5'- -gGCGGCGgccgGCGGcCGcggCGGCCCCg -3'
miRNA:   3'- ggCGUCGCaa--CGCCaGUua-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 8581 0.73 0.570873
Target:  5'- -gGCAGCGUgGUGGUUAgccgcgcgagcGUCAGCCgCa -3'
miRNA:   3'- ggCGUCGCAaCGCCAGU-----------UAGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 83506 0.72 0.607547
Target:  5'- gCCGCGGCGcugcgugccuuccUGCGGUCcGUgCGccGCCCCg -3'
miRNA:   3'- -GGCGUCGCa------------ACGCCAGuUA-GU--CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 97100 0.72 0.611643
Target:  5'- gCCGCGGCGgcGCGGUU----GGCCgCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCAGuuagUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 16636 0.71 0.632149
Target:  5'- gCGCGGCGgcuuUGCcGUCGG--GGCCCCg -3'
miRNA:   3'- gGCGUCGCa---ACGcCAGUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 3237 0.71 0.662887
Target:  5'- gCCGCGGC-UUGCGGUaCAG-CAGCgagaCCa -3'
miRNA:   3'- -GGCGUCGcAACGCCA-GUUaGUCGg---GG- -5'
6354 5' -55.7 NC_001847.1 + 92660 0.7 0.6934
Target:  5'- cCCGCAGCGcuuCGG-CGcgCcGCCCCa -3'
miRNA:   3'- -GGCGUCGCaacGCCaGUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 59403 0.7 0.70348
Target:  5'- gCCGgcggaGGCGcgGCGGUC-AUCGcugcGCCCCg -3'
miRNA:   3'- -GGCg----UCGCaaCGCCAGuUAGU----CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 82892 0.7 0.7135
Target:  5'- gCCGCAGCcaagccGCGG-CGcgCGGCgCCCg -3'
miRNA:   3'- -GGCGUCGcaa---CGCCaGUuaGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 130149 0.7 0.733321
Target:  5'- gCCGCcGCGcuuugccGCGGcCGccgCAGCCCCa -3'
miRNA:   3'- -GGCGuCGCaa-----CGCCaGUua-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 14603 0.69 0.75279
Target:  5'- gCCGUcuGGCGc-GCGGUCA-UCGGCUCg -3'
miRNA:   3'- -GGCG--UCGCaaCGCCAGUuAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 19278 0.69 0.781169
Target:  5'- gCGCAGCGUcugUGCGG-CG---GGCCgCCa -3'
miRNA:   3'- gGCGUCGCA---ACGCCaGUuagUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 62572 0.69 0.789458
Target:  5'- gCCGCGguugcucggcuuuGCGUUugccccGCGG-CGAUC-GCCCCg -3'
miRNA:   3'- -GGCGU-------------CGCAA------CGCCaGUUAGuCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.