miRNA display CGI


Results 121 - 140 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 53881 0.71 0.646507
Target:  5'- gCCGCGGgGgcgGCGGgccccccguccucgCGA-CGGCCCCg -3'
miRNA:   3'- -GGCGUCgCaa-CGCCa-------------GUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 31961 0.71 0.662887
Target:  5'- gCCGCGGCG--GCGG-CG---GGCCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 67544 0.67 0.880364
Target:  5'- uCCGCAgGCGcggGCGGUUcucccaGAUCGGCgCg -3'
miRNA:   3'- -GGCGU-CGCaa-CGCCAG------UUAGUCGgGg -5'
6354 5' -55.7 NC_001847.1 + 133426 0.67 0.87317
Target:  5'- gCCGCGGCGcggcgGCGGcUGAUCGuGCUCg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCaGUUAGU-CGGGg -5'
6354 5' -55.7 NC_001847.1 + 101641 0.67 0.86576
Target:  5'- uCCGUGuCGUcaaugGCGGUCAGgucggaggugcUgAGCCCCg -3'
miRNA:   3'- -GGCGUcGCAa----CGCCAGUU-----------AgUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 120234 0.7 0.731354
Target:  5'- aUCGCGGCGagGCaGUCGGccugcgcgcggaCGGCCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGcCAGUUa-----------GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 130255 0.7 0.743104
Target:  5'- uUCGCAGCGgcGCGGg-----GGCCCUg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaguuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 65443 0.69 0.771832
Target:  5'- gCCGC-GCGccGCGGacCGAgcgcCGGCCCCg -3'
miRNA:   3'- -GGCGuCGCaaCGCCa-GUUa---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 132221 0.69 0.781169
Target:  5'- gCCGCgcuGGCGgcGCGGaCcg-UGGCCCCg -3'
miRNA:   3'- -GGCG---UCGCaaCGCCaGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 36701 0.68 0.799432
Target:  5'- -aGCGGCGUgguggagGCGGcuUCGGUC-GCCgCCg -3'
miRNA:   3'- ggCGUCGCAa------CGCC--AGUUAGuCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 65277 0.68 0.799432
Target:  5'- uCCGCAGCG--GCGGgccuacgUAAUCGGCUa- -3'
miRNA:   3'- -GGCGUCGCaaCGCCa------GUUAGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 134776 0.68 0.80834
Target:  5'- gCGCGGCGc-GCGGggCG---GGCCCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCa-GUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 88302 0.68 0.817088
Target:  5'- gCGCcGCGgggGCGGUCGAcuuuugcgcgcuUUAGCCgCg -3'
miRNA:   3'- gGCGuCGCaa-CGCCAGUU------------AGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 104069 0.68 0.825667
Target:  5'- gCCGCAGCGgcGCGc-CG---AGCCCCc -3'
miRNA:   3'- -GGCGUCGCaaCGCcaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 54556 0.68 0.834068
Target:  5'- gCgGgGGCGgcGCGGagGAcgaCGGCCCCg -3'
miRNA:   3'- -GgCgUCGCaaCGCCagUUa--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 78956 0.68 0.834068
Target:  5'- cCCGCAGgcugGCGcUCGcgCAGCCUCg -3'
miRNA:   3'- -GGCGUCgcaaCGCcAGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 83880 0.68 0.842286
Target:  5'- gCCGCGGCGcUGCaucucGUCAcuuucAUCGGCCg- -3'
miRNA:   3'- -GGCGUCGCaACGc----CAGU-----UAGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 48637 0.67 0.850312
Target:  5'- gCCGCGGCG--GCGGggCGccgCcGCCCCc -3'
miRNA:   3'- -GGCGUCGCaaCGCCa-GUua-GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 78203 0.67 0.858139
Target:  5'- cUCGCGGCGgcUGCGGUgCAccGUCGuGUUCCc -3'
miRNA:   3'- -GGCGUCGCa-ACGCCA-GU--UAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 107689 0.67 0.858139
Target:  5'- -gGCGGCGggcaGCGG-CAG--GGCCCCc -3'
miRNA:   3'- ggCGUCGCaa--CGCCaGUUagUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.