miRNA display CGI


Results 141 - 160 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 27157 0.68 0.834068
Target:  5'- gCGCAGCc--GCGG-CGGcCAGCCCa -3'
miRNA:   3'- gGCGUCGcaaCGCCaGUUaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 116578 0.67 0.858139
Target:  5'- gCGCGGCacacggGcCGGUCAccgAGCCCCg -3'
miRNA:   3'- gGCGUCGcaa---C-GCCAGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 104069 0.68 0.825667
Target:  5'- gCCGCAGCGgcGCGc-CG---AGCCCCc -3'
miRNA:   3'- -GGCGUCGCaaCGCcaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 33701 0.67 0.880364
Target:  5'- cUCGCGGCGcgGCGG-CGcgUGGCCg- -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 15549 0.67 0.880364
Target:  5'- gCCGguGCGcgcGCGGccgUCGGgccgCGGCCgCCg -3'
miRNA:   3'- -GGCguCGCaa-CGCC---AGUUa---GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 11058 0.66 0.887336
Target:  5'- gCCGCAGCG--GCGG-CAGUUcaccuGCCUg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUUAGu----CGGGg -5'
6354 5' -55.7 NC_001847.1 + 132341 0.66 0.887336
Target:  5'- gCGCGGCug-GCGGcCGcgcucgCGGCCCUg -3'
miRNA:   3'- gGCGUCGcaaCGCCaGUua----GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 99614 0.66 0.894081
Target:  5'- gCUGCAGUccgGCGGaaaAAUacaAGCCCCg -3'
miRNA:   3'- -GGCGUCGcaaCGCCag-UUAg--UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 60648 0.66 0.894081
Target:  5'- gCGCGGCGcaggcGCGGcugcugcaUCAAcacgccCAGCCCCc -3'
miRNA:   3'- gGCGUCGCaa---CGCC--------AGUUa-----GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 48637 0.67 0.850312
Target:  5'- gCCGCGGCG--GCGGggCGccgCcGCCCCc -3'
miRNA:   3'- -GGCGUCGCaaCGCCa-GUua-GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 74311 0.67 0.86576
Target:  5'- gCGCAGCGccGCGGg----C-GCCCCu -3'
miRNA:   3'- gGCGUCGCaaCGCCaguuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 17364 0.69 0.771832
Target:  5'- cCCGCAGgGguauUUGUGGau-GUCGGCgCCCa -3'
miRNA:   3'- -GGCGUCgC----AACGCCaguUAGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 90882 0.69 0.762369
Target:  5'- gCCGgGGcCGUUGCccagucgccGGcgCGcUCAGCCCCa -3'
miRNA:   3'- -GGCgUC-GCAACG---------CCa-GUuAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 107642 0.69 0.762369
Target:  5'- gCCGCGGCG--GCGGcCGA--GGCCUCu -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 79989 0.69 0.762369
Target:  5'- gCCGCuGCGcgGCGGUgAc---GCCCCg -3'
miRNA:   3'- -GGCGuCGCaaCGCCAgUuaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 14766 0.69 0.75279
Target:  5'- cCCGCGGCGUgguaGCGcagcagcUCGA-CGGUCCCg -3'
miRNA:   3'- -GGCGUCGCAa---CGCc------AGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 101592 0.69 0.75279
Target:  5'- uCCGCGGCGUcUGCcGcCucuUCGGCgCCCg -3'
miRNA:   3'- -GGCGUCGCA-ACGcCaGuu-AGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 74615 0.67 0.858139
Target:  5'- uCCGCGGUGUgaGCGGUgccgCGGCCa- -3'
miRNA:   3'- -GGCGUCGCAa-CGCCAguuaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 91660 0.67 0.858139
Target:  5'- aCgGCGGCGcgGCGGgacgCGAUCGcGCgCUCg -3'
miRNA:   3'- -GgCGUCGCaaCGCCa---GUUAGU-CG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 100759 0.66 0.894081
Target:  5'- gCCGCGGCG--GCGGcCGccguuguuUCGGCCgCa -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUu-------AGUCGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.