miRNA display CGI


Results 161 - 180 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 29225 0.69 0.781169
Target:  5'- gCCGCGGCGggccGCGGcCugcCGGCCgCg -3'
miRNA:   3'- -GGCGUCGCaa--CGCCaGuuaGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 124741 0.69 0.781169
Target:  5'- gCGCGGgGgaggGCcGUCAuaaagCGGCCCCg -3'
miRNA:   3'- gGCGUCgCaa--CGcCAGUua---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 98591 0.69 0.771832
Target:  5'- gCGCGGCGccaGCGcGUCAAUCuccgaauccGCCUCg -3'
miRNA:   3'- gGCGUCGCaa-CGC-CAGUUAGu--------CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 62316 0.69 0.771832
Target:  5'- uCCGUGGCGaaGCGGUCuuGUCgcacgaccgugAGCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCAGu-UAG-----------UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 90882 0.69 0.762369
Target:  5'- gCCGgGGcCGUUGCccagucgccGGcgCGcUCAGCCCCa -3'
miRNA:   3'- -GGCgUC-GCAACG---------CCa-GUuAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 107642 0.69 0.762369
Target:  5'- gCCGCGGCG--GCGGcCGA--GGCCUCu -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 79989 0.69 0.762369
Target:  5'- gCCGCuGCGcgGCGGUgAc---GCCCCg -3'
miRNA:   3'- -GGCGuCGCaaCGCCAgUuaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 14766 0.69 0.75279
Target:  5'- cCCGCGGCGUgguaGCGcagcagcUCGA-CGGUCCCg -3'
miRNA:   3'- -GGCGUCGCAa---CGCc------AGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 134194 0.69 0.781169
Target:  5'- gCGCAGCGUggaGCGGcgCGcgCGGgCCg -3'
miRNA:   3'- gGCGUCGCAa--CGCCa-GUuaGUCgGGg -5'
6354 5' -55.7 NC_001847.1 + 47452 0.69 0.790372
Target:  5'- gCCGCcGCGgcGCcG-CAG-CAGCCCCa -3'
miRNA:   3'- -GGCGuCGCaaCGcCaGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 102152 0.67 0.86576
Target:  5'- aCCaCGGCGgcGCGGcccgccgCAAgcUCAGCCgCCa -3'
miRNA:   3'- -GGcGUCGCaaCGCCa------GUU--AGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 128783 0.67 0.86576
Target:  5'- gCCGCAGCGgcuacgcccGCGGcgCGGUU-GCCgCCg -3'
miRNA:   3'- -GGCGUCGCaa-------CGCCa-GUUAGuCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 18347 0.66 0.900597
Target:  5'- gCGCAGUc--GCGGUCGcccaagaucGUCGGCgggCCCg -3'
miRNA:   3'- gGCGUCGcaaCGCCAGU---------UAGUCG---GGG- -5'
6354 5' -55.7 NC_001847.1 + 45132 0.66 0.899312
Target:  5'- gUGCAGCucggcgccuucUGCGGggug-CAGCCCCg -3'
miRNA:   3'- gGCGUCGca---------ACGCCaguuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 56097 0.66 0.894081
Target:  5'- gCGCcGCGUUaaGCGcGUCGAUguGCCa- -3'
miRNA:   3'- gGCGuCGCAA--CGC-CAGUUAguCGGgg -5'
6354 5' -55.7 NC_001847.1 + 100759 0.66 0.894081
Target:  5'- gCCGCGGCG--GCGGcCGccguuguuUCGGCCgCa -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUu-------AGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 30613 0.67 0.87317
Target:  5'- gCCGCGGCGcggcgGCGGcUGAUCGuGCUCg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCaGUUAGU-CGGGg -5'
6354 5' -55.7 NC_001847.1 + 53589 0.67 0.87317
Target:  5'- gCGCAGCugcGCGGggccggCGAgcUCGGCCgCCg -3'
miRNA:   3'- gGCGUCGcaaCGCCa-----GUU--AGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 64193 0.69 0.790372
Target:  5'- aCCGCGGCGggaacaUGCgcgGGUCGGgguGCCCg -3'
miRNA:   3'- -GGCGUCGCa-----ACG---CCAGUUaguCGGGg -5'
6354 5' -55.7 NC_001847.1 + 33333 0.69 0.771832
Target:  5'- -gGCGGCGcgcUGCGuGaCGGUgGGCCCCu -3'
miRNA:   3'- ggCGUCGCa--ACGC-CaGUUAgUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.