miRNA display CGI


Results 81 - 100 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 35295 0.67 0.88318
Target:  5'- aCGguGCGUggGCGGgggcgggCAAcgcaaagcacuaagCGGCCCCc -3'
miRNA:   3'- gGCguCGCAa-CGCCa------GUUa-------------GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 88370 0.67 0.880364
Target:  5'- gCGCGGgCGcgGCGGac---CGGCCCCg -3'
miRNA:   3'- gGCGUC-GCaaCGCCaguuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 67059 0.67 0.880364
Target:  5'- aCCGCucGCGccGCGG-CGuUC-GCCCCg -3'
miRNA:   3'- -GGCGu-CGCaaCGCCaGUuAGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 32133 0.67 0.880364
Target:  5'- gCGCcgggGGCGgggGCGGgggCGGg-GGCCCCg -3'
miRNA:   3'- gGCG----UCGCaa-CGCCa--GUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 53772 0.67 0.880364
Target:  5'- -gGCGGCGaggGCGG-CAGcaccgCAGCCgCCg -3'
miRNA:   3'- ggCGUCGCaa-CGCCaGUUa----GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 50801 0.67 0.880364
Target:  5'- cUCGCGGCGcUGCGGcCGGUaCGGUuuUa -3'
miRNA:   3'- -GGCGUCGCaACGCCaGUUA-GUCGggG- -5'
6354 5' -55.7 NC_001847.1 + 44038 0.67 0.880364
Target:  5'- gCUGCAGCGaggcGCGcGUCGGggCcGCCCUg -3'
miRNA:   3'- -GGCGUCGCaa--CGC-CAGUUa-GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 30723 0.66 0.887336
Target:  5'- gCCGCGGCGcagUGCGccgCGcgCuGGCCCg -3'
miRNA:   3'- -GGCGUCGCa--ACGCca-GUuaG-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 74140 0.66 0.887336
Target:  5'- gCGCGGCGccgaugGCGGccUCGA-CGGCgCCg -3'
miRNA:   3'- gGCGUCGCaa----CGCC--AGUUaGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 79677 0.66 0.887336
Target:  5'- -gGCAGCGgcuagcGCGG-CGcgC-GCCCCg -3'
miRNA:   3'- ggCGUCGCaa----CGCCaGUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 18347 0.66 0.900597
Target:  5'- gCGCAGUc--GCGGUCGcccaagaucGUCGGCgggCCCg -3'
miRNA:   3'- gGCGUCGcaaCGCCAGU---------UAGUCG---GGG- -5'
6354 5' -55.7 NC_001847.1 + 45132 0.66 0.899312
Target:  5'- gUGCAGCucggcgccuucUGCGGggug-CAGCCCCg -3'
miRNA:   3'- gGCGUCGca---------ACGCCaguuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 56097 0.66 0.894081
Target:  5'- gCGCcGCGUUaaGCGcGUCGAUguGCCa- -3'
miRNA:   3'- gGCGuCGCAA--CGC-CAGUUAguCGGgg -5'
6354 5' -55.7 NC_001847.1 + 100759 0.66 0.894081
Target:  5'- gCCGCGGCG--GCGGcCGccguuguuUCGGCCgCa -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUu-------AGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 58382 0.66 0.894081
Target:  5'- cUCGUAGCGggugccgGCGGgCAG-CAGCUCUu -3'
miRNA:   3'- -GGCGUCGCaa-----CGCCaGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 2292 0.66 0.894081
Target:  5'- uCgGCGGCGgggccgccggGCGG-C-AUgGGCCCCa -3'
miRNA:   3'- -GgCGUCGCaa--------CGCCaGuUAgUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 3899 0.66 0.887336
Target:  5'- gCCGCGGCGUagccagcGCGGgcgcCGGUUGcGCgCCCg -3'
miRNA:   3'- -GGCGUCGCAa------CGCCa---GUUAGU-CG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 99017 0.66 0.887336
Target:  5'- uCCGCGGCGcgcGCGGcuUCGuggaaGGCgCCCa -3'
miRNA:   3'- -GGCGUCGCaa-CGCC--AGUuag--UCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 90741 0.66 0.887336
Target:  5'- cUCGCGGCGc-GUGGcCG---GGCCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 42069 0.67 0.880364
Target:  5'- gCUGguGcCGcUGCGG-CGcAUCGGCCUCg -3'
miRNA:   3'- -GGCguC-GCaACGCCaGU-UAGUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.