miRNA display CGI


Results 101 - 120 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 102297 0.67 0.87317
Target:  5'- gCGCgAGCGccGCGGUCucggCGGCCa- -3'
miRNA:   3'- gGCG-UCGCaaCGCCAGuua-GUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 53589 0.67 0.87317
Target:  5'- gCGCAGCugcGCGGggccggCGAgcUCGGCCgCCg -3'
miRNA:   3'- gGCGUCGcaaCGCCa-----GUU--AGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 50512 0.67 0.87317
Target:  5'- gCGCAGCaGccGCGG-CAu--GGCCCCg -3'
miRNA:   3'- gGCGUCG-CaaCGCCaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 30613 0.67 0.87317
Target:  5'- gCCGCGGCGcggcgGCGGcUGAUCGuGCUCg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCaGUUAGU-CGGGg -5'
6354 5' -55.7 NC_001847.1 + 128783 0.67 0.86576
Target:  5'- gCCGCAGCGgcuacgcccGCGGcgCGGUU-GCCgCCg -3'
miRNA:   3'- -GGCGUCGCaa-------CGCCa-GUUAGuCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 32133 0.67 0.880364
Target:  5'- gCGCcgggGGCGgggGCGGgggCGGg-GGCCCCg -3'
miRNA:   3'- gGCG----UCGCaa-CGCCa--GUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 67059 0.67 0.880364
Target:  5'- aCCGCucGCGccGCGG-CGuUC-GCCCCg -3'
miRNA:   3'- -GGCGu-CGCaaCGCCaGUuAGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 58382 0.66 0.894081
Target:  5'- cUCGUAGCGggugccgGCGGgCAG-CAGCUCUu -3'
miRNA:   3'- -GGCGUCGCaa-----CGCCaGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 2292 0.66 0.894081
Target:  5'- uCgGCGGCGgggccgccggGCGG-C-AUgGGCCCCa -3'
miRNA:   3'- -GgCGUCGCaa--------CGCCaGuUAgUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 3899 0.66 0.887336
Target:  5'- gCCGCGGCGUagccagcGCGGgcgcCGGUUGcGCgCCCg -3'
miRNA:   3'- -GGCGUCGCAa------CGCCa---GUUAGU-CG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 99017 0.66 0.887336
Target:  5'- uCCGCGGCGcgcGCGGcuUCGuggaaGGCgCCCa -3'
miRNA:   3'- -GGCGUCGCaa-CGCC--AGUuag--UCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 90741 0.66 0.887336
Target:  5'- cUCGCGGCGc-GUGGcCG---GGCCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 79677 0.66 0.887336
Target:  5'- -gGCAGCGgcuagcGCGG-CGcgC-GCCCCg -3'
miRNA:   3'- ggCGUCGCaa----CGCCaGUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 74140 0.66 0.887336
Target:  5'- gCGCGGCGccgaugGCGGccUCGA-CGGCgCCg -3'
miRNA:   3'- gGCGUCGCaa----CGCC--AGUUaGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 30723 0.66 0.887336
Target:  5'- gCCGCGGCGcagUGCGccgCGcgCuGGCCCg -3'
miRNA:   3'- -GGCGUCGCa--ACGCca-GUuaG-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 29528 0.66 0.887336
Target:  5'- gCGCGGCug-GCGGcCGcgcucgCGGCCCUg -3'
miRNA:   3'- gGCGUCGcaaCGCCaGUua----GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 29366 0.66 0.887336
Target:  5'- nCgGCGGCGcUGCGcGcCGAggCGGCCgCCg -3'
miRNA:   3'- -GgCGUCGCaACGC-CaGUUa-GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 58459 0.66 0.887336
Target:  5'- gCCGCAGCGccGCgcgcgugaacgGGUCGAaaaaGGCgCCCu -3'
miRNA:   3'- -GGCGUCGCaaCG-----------CCAGUUag--UCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 35295 0.67 0.88318
Target:  5'- aCGguGCGUggGCGGgggcgggCAAcgcaaagcacuaagCGGCCCCc -3'
miRNA:   3'- gGCguCGCAa-CGCCa------GUUa-------------GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 88370 0.67 0.880364
Target:  5'- gCGCGGgCGcgGCGGac---CGGCCCCg -3'
miRNA:   3'- gGCGUC-GCaaCGCCaguuaGUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.