miRNA display CGI


Results 141 - 160 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 74311 0.67 0.86576
Target:  5'- gCGCAGCGccGCGGg----C-GCCCCu -3'
miRNA:   3'- gGCGUCGCaaCGCCaguuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 102152 0.67 0.86576
Target:  5'- aCCaCGGCGgcGCGGcccgccgCAAgcUCAGCCgCCa -3'
miRNA:   3'- -GGcGUCGCaaCGCCa------GUU--AGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 44038 0.67 0.880364
Target:  5'- gCUGCAGCGaggcGCGcGUCGGggCcGCCCUg -3'
miRNA:   3'- -GGCGUCGCaa--CGC-CAGUUa-GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 50801 0.67 0.880364
Target:  5'- cUCGCGGCGcUGCGGcCGGUaCGGUuuUa -3'
miRNA:   3'- -GGCGUCGCaACGCCaGUUA-GUCGggG- -5'
6354 5' -55.7 NC_001847.1 + 53772 0.67 0.880364
Target:  5'- -gGCGGCGaggGCGG-CAGcaccgCAGCCgCCg -3'
miRNA:   3'- ggCGUCGCaa-CGCCaGUUa----GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 32133 0.67 0.880364
Target:  5'- gCGCcgggGGCGgggGCGGgggCGGg-GGCCCCg -3'
miRNA:   3'- gGCG----UCGCaa-CGCCa--GUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 67059 0.67 0.880364
Target:  5'- aCCGCucGCGccGCGG-CGuUC-GCCCCg -3'
miRNA:   3'- -GGCGu-CGCaaCGCCaGUuAGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 88370 0.67 0.880364
Target:  5'- gCGCGGgCGcgGCGGac---CGGCCCCg -3'
miRNA:   3'- gGCGUC-GCaaCGCCaguuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 35295 0.67 0.88318
Target:  5'- aCGguGCGUggGCGGgggcgggCAAcgcaaagcacuaagCGGCCCCc -3'
miRNA:   3'- gGCguCGCAa-CGCCa------GUUa-------------GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 58459 0.66 0.887336
Target:  5'- gCCGCAGCGccGCgcgcgugaacgGGUCGAaaaaGGCgCCCu -3'
miRNA:   3'- -GGCGUCGCaaCG-----------CCAGUUag--UCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 42069 0.67 0.880364
Target:  5'- gCUGguGcCGcUGCGG-CGcAUCGGCCUCg -3'
miRNA:   3'- -GGCguC-GCaACGCCaGU-UAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 13551 0.67 0.880364
Target:  5'- gCCGgGGCGgcGCGGUgGGUUGcauugccaaauGCCCUu -3'
miRNA:   3'- -GGCgUCGCaaCGCCAgUUAGU-----------CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 128783 0.67 0.86576
Target:  5'- gCCGCAGCGgcuacgcccGCGGcgCGGUU-GCCgCCg -3'
miRNA:   3'- -GGCGUCGCaa-------CGCCa-GUUAGuCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 30613 0.67 0.87317
Target:  5'- gCCGCGGCGcggcgGCGGcUGAUCGuGCUCg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCaGUUAGU-CGGGg -5'
6354 5' -55.7 NC_001847.1 + 50512 0.67 0.87317
Target:  5'- gCGCAGCaGccGCGG-CAu--GGCCCCg -3'
miRNA:   3'- gGCGUCG-CaaCGCCaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 53589 0.67 0.87317
Target:  5'- gCGCAGCugcGCGGggccggCGAgcUCGGCCgCCg -3'
miRNA:   3'- gGCGUCGcaaCGCCa-----GUU--AGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 102297 0.67 0.87317
Target:  5'- gCGCgAGCGccGCGGUCucggCGGCCa- -3'
miRNA:   3'- gGCG-UCGCaaCGCCAGuua-GUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 47207 0.67 0.87317
Target:  5'- aCGCucaccGCGUgcGCGGcCGcgccCAGCCCCa -3'
miRNA:   3'- gGCGu----CGCAa-CGCCaGUua--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 47422 0.67 0.87317
Target:  5'- -gGCGGCGUcUGCGacGUCG-UCGGCUUCg -3'
miRNA:   3'- ggCGUCGCA-ACGC--CAGUuAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 90473 0.67 0.87317
Target:  5'- uCCGCGGCucgccggucacgGUgcagGCGGggCAG-CAGCCuCCg -3'
miRNA:   3'- -GGCGUCG------------CAa---CGCCa-GUUaGUCGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.