miRNA display CGI


Results 1 - 20 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 134946 0.67 0.880364
Target:  5'- gCGCcgggGGCGgggGCGGgggCGGg-GGCCCCg -3'
miRNA:   3'- gGCG----UCGCaa-CGCCa--GUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 134776 0.68 0.80834
Target:  5'- gCGCGGCGc-GCGGggCG---GGCCCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCa-GUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 134581 0.71 0.673095
Target:  5'- gUCGCcGCcagGCaGGUCAAUCGuGCCCCc -3'
miRNA:   3'- -GGCGuCGcaaCG-CCAGUUAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 134244 0.74 0.472776
Target:  5'- -gGCGGCGgccgGCGGcCGcggCGGCCCCg -3'
miRNA:   3'- ggCGUCGCaa--CGCCaGUua-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 134194 0.69 0.781169
Target:  5'- gCGCAGCGUggaGCGGcgCGcgCGGgCCg -3'
miRNA:   3'- gGCGUCGCAa--CGCCa-GUuaGUCgGGg -5'
6354 5' -55.7 NC_001847.1 + 134049 0.68 0.811859
Target:  5'- aCGCGGCGUcuccagagucacagGCGGggagcagCGAaCAGCCCg -3'
miRNA:   3'- gGCGUCGCAa-------------CGCCa------GUUaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 134040 0.68 0.834068
Target:  5'- gCCGCGGCGgcgccgcccGCGGcCg--CGGCgCCCg -3'
miRNA:   3'- -GGCGUCGCaa-------CGCCaGuuaGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 133536 0.66 0.887336
Target:  5'- gCCGCGGCGcagUGCGccgCGcgCuGGCCCg -3'
miRNA:   3'- -GGCGUCGCa--ACGCca-GUuaG-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 133426 0.67 0.87317
Target:  5'- gCCGCGGCGcggcgGCGGcUGAUCGuGCUCg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCaGUUAGU-CGGGg -5'
6354 5' -55.7 NC_001847.1 + 132928 0.72 0.591198
Target:  5'- gCCGCGGCGcugGCGGcCuacugCcGCCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCaGuua--GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 132547 0.68 0.817088
Target:  5'- gCGCGGCGggcucgcgUGCGGcCGcggCGGCCgCg -3'
miRNA:   3'- gGCGUCGCa-------ACGCCaGUua-GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 132341 0.66 0.887336
Target:  5'- gCGCGGCug-GCGGcCGcgcucgCGGCCCUg -3'
miRNA:   3'- gGCGUCGcaaCGCCaGUua----GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 132268 0.7 0.6934
Target:  5'- gCGCGGCGcgGCGGcCcgcgcGUCGGCCUg -3'
miRNA:   3'- gGCGUCGCaaCGCCaGu----UAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 132221 0.69 0.781169
Target:  5'- gCCGCgcuGGCGgcGCGGaCcg-UGGCCCCg -3'
miRNA:   3'- -GGCG---UCGCaaCGCCaGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 132179 0.66 0.887336
Target:  5'- nCgGCGGCGcUGCGcGcCGAggCGGCCgCCg -3'
miRNA:   3'- -GgCGUCGCaACGC-CaGUUa-GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 132144 0.7 0.733321
Target:  5'- aCGCGGUGgagcgcgcGCGGcuccagCGcgCGGCCCCg -3'
miRNA:   3'- gGCGUCGCaa------CGCCa-----GUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 132038 0.69 0.781169
Target:  5'- gCCGCGGCGggccGCGGcCugcCGGCCgCg -3'
miRNA:   3'- -GGCGUCGCaa--CGCCaGuuaGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 131923 0.66 0.900597
Target:  5'- gCCGCGGCGgcGCGGaggCAcgU-GCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCa--GUuaGuCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 131607 0.66 0.906878
Target:  5'- gCCGCcGCGcucGCGGccgUAGUCGGCCa- -3'
miRNA:   3'- -GGCGuCGCaa-CGCCa--GUUAGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 131216 0.72 0.621892
Target:  5'- gCCGCGGCGccagcGCGGgcgcgCAAcCGGCgCCCg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCa----GUUaGUCG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.