miRNA display CGI


Results 21 - 40 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 73862 0.71 0.652655
Target:  5'- gCCGCGgugcGCGggGCGcGUCAGUUccgccggcGCCCCg -3'
miRNA:   3'- -GGCGU----CGCaaCGC-CAGUUAGu-------CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 15994 0.72 0.621892
Target:  5'- cCCGCGGCGgccGCGGcgccgacgagcUCGccAUCgacGGCCCCa -3'
miRNA:   3'- -GGCGUCGCaa-CGCC-----------AGU--UAG---UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 132928 0.72 0.591198
Target:  5'- gCCGCGGCGcugGCGGcCuacugCcGCCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCaGuua--GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 114198 0.75 0.444984
Target:  5'- aCGCAGCauccGCGuGUCAAUCAGCUCa -3'
miRNA:   3'- gGCGUCGcaa-CGC-CAGUUAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 66511 0.7 0.712501
Target:  5'- gCGCGGUGgaggcgcgccgccUUGCGGUCcc-CGGCCCg -3'
miRNA:   3'- gGCGUCGC-------------AACGCCAGuuaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 92660 0.7 0.6934
Target:  5'- cCCGCAGCGcuuCGG-CGcgCcGCCCCa -3'
miRNA:   3'- -GGCGUCGCaacGCCaGUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 118371 0.72 0.621892
Target:  5'- cCCGCcguGCGgcGCGG-CAuucucAUCGGCCUCg -3'
miRNA:   3'- -GGCGu--CGCaaCGCCaGU-----UAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 128573 0.75 0.435925
Target:  5'- gCCGCGGCGaguaauUUGCGGUUAgaacagGUCGcGCCCUc -3'
miRNA:   3'- -GGCGUCGC------AACGCCAGU------UAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 54396 0.7 0.6934
Target:  5'- gCCGCgGGCGagGCGGgcgccgccgCGGUUGGCCUCg -3'
miRNA:   3'- -GGCG-UCGCaaCGCCa--------GUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 19816 0.75 0.414625
Target:  5'- gCgGUGGCGggGCGGcagaaaaagaacaCAGUCAGCCCCu -3'
miRNA:   3'- -GgCGUCGCaaCGCCa------------GUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 131216 0.72 0.621892
Target:  5'- gCCGCGGCGccagcGCGGgcgcgCAAcCGGCgCCCg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCa----GUUaGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 3237 0.71 0.662887
Target:  5'- gCCGCGGC-UUGCGGUaCAG-CAGCgagaCCa -3'
miRNA:   3'- -GGCGUCGcAACGCCA-GUUaGUCGg---GG- -5'
6354 5' -55.7 NC_001847.1 + 28294 0.72 0.611643
Target:  5'- aCGCGGCG-UGCgugGGUguGUUAGgCCCCg -3'
miRNA:   3'- gGCGUCGCaACG---CCAguUAGUC-GGGG- -5'
6354 5' -55.7 NC_001847.1 + 39601 0.72 0.601409
Target:  5'- gCUGCuGCGgcGCGGcCc--CAGCCCCa -3'
miRNA:   3'- -GGCGuCGCaaCGCCaGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 27791 0.73 0.550721
Target:  5'- gCGCGGCGggUGCGGgcucuggcCAuUCGcGCCCCg -3'
miRNA:   3'- gGCGUCGCa-ACGCCa-------GUuAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 104739 0.75 0.454148
Target:  5'- gCCGCGGCGcgGCGGcCAcUCgGGCCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuAG-UCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 34009 0.7 0.732338
Target:  5'- uUCGCGGCGgUGCugggcaccgcgcuGGgccaggCGAUgGGCCCCg -3'
miRNA:   3'- -GGCGUCGCaACG-------------CCa-----GUUAgUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 62500 0.7 0.7135
Target:  5'- gCCGCGGgGUgGCGGcCA--CAGCCgCCc -3'
miRNA:   3'- -GGCGUCgCAaCGCCaGUuaGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 14185 0.7 0.70348
Target:  5'- aCGCGGCGcUG-GGUCcgcccacAUCAGCCaCCa -3'
miRNA:   3'- gGCGUCGCaACgCCAGu------UAGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 132268 0.7 0.6934
Target:  5'- gCGCGGCGcgGCGGcCcgcgcGUCGGCCUg -3'
miRNA:   3'- gGCGUCGCaaCGCCaGu----UAGUCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.