miRNA display CGI


Results 41 - 60 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 15013 0.66 0.900597
Target:  5'- gCCGCGGUGggGCcGcgCGAgccgCGGCCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGcCa-GUUa---GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 27519 0.66 0.900597
Target:  5'- gCCGCGGCGgcgGCGGggac---GCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCaguuaguCGGGg -5'
6354 5' -55.7 NC_001847.1 + 6292 0.66 0.900597
Target:  5'- -gGCAGCGgaccucgGCGa--GGUCGGCCUCg -3'
miRNA:   3'- ggCGUCGCaa-----CGCcagUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 56141 0.66 0.900597
Target:  5'- gCGCAGCcuccGggGUGGcUCAG-CAGCCgCCc -3'
miRNA:   3'- gGCGUCG----CaaCGCC-AGUUaGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 18347 0.66 0.900597
Target:  5'- gCGCAGUc--GCGGUCGcccaagaucGUCGGCgggCCCg -3'
miRNA:   3'- gGCGUCGcaaCGCCAGU---------UAGUCG---GGG- -5'
6354 5' -55.7 NC_001847.1 + 131923 0.66 0.900597
Target:  5'- gCCGCGGCGgcGCGGaggCAcgU-GCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCa--GUuaGuCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 23805 0.66 0.900597
Target:  5'- gCGCGGCGgccaccgaccacugcUcGCGGUCcagcgcgcgcaCGGCCCCg -3'
miRNA:   3'- gGCGUCGC---------------AaCGCCAGuua--------GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 48520 0.66 0.900597
Target:  5'- aCGCAGaCGUUGUGGcccgccUCGAggCGcGCCCg -3'
miRNA:   3'- gGCGUC-GCAACGCC------AGUUa-GU-CGGGg -5'
6354 5' -55.7 NC_001847.1 + 26477 0.66 0.900597
Target:  5'- gCGCGG-GgaGCGGaaacUCGuccgCGGCCCCg -3'
miRNA:   3'- gGCGUCgCaaCGCC----AGUua--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 43126 0.66 0.900597
Target:  5'- cCCGCAGaCGgcGCGGgcccgCGGgcgCuGCgCCCg -3'
miRNA:   3'- -GGCGUC-GCaaCGCCa----GUUa--GuCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 124642 0.66 0.900597
Target:  5'- cCCGCAgcagcGCGggGCcGUCGGggaAGCCCa -3'
miRNA:   3'- -GGCGU-----CGCaaCGcCAGUUag-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 45257 0.66 0.900597
Target:  5'- gCCGcCGGCGUgagcGCGG-CGA--AGCCCg -3'
miRNA:   3'- -GGC-GUCGCAa---CGCCaGUUagUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 90191 0.66 0.900597
Target:  5'- gCUGCuGCGgcGCGccGUCGccCAGCCCg -3'
miRNA:   3'- -GGCGuCGCaaCGC--CAGUuaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 37357 0.66 0.900597
Target:  5'- aCCGUGGCGgagcugGCGcGUC--UCAuCCCCg -3'
miRNA:   3'- -GGCGUCGCaa----CGC-CAGuuAGUcGGGG- -5'
6354 5' -55.7 NC_001847.1 + 124338 0.66 0.900597
Target:  5'- -aGCAGCGc-GCGG-CAGU-AGCCCa -3'
miRNA:   3'- ggCGUCGCaaCGCCaGUUAgUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 63465 0.66 0.899956
Target:  5'- aCGCGGCGggccuggUUGCguacuaccaGGcCAGguucgCGGCCCCg -3'
miRNA:   3'- gGCGUCGC-------AACG---------CCaGUUa----GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 45132 0.66 0.899312
Target:  5'- gUGCAGCucggcgccuucUGCGGggug-CAGCCCCg -3'
miRNA:   3'- gGCGUCGca---------ACGCCaguuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 60648 0.66 0.894081
Target:  5'- gCGCGGCGcaggcGCGGcugcugcaUCAAcacgccCAGCCCCc -3'
miRNA:   3'- gGCGUCGCaa---CGCC--------AGUUa-----GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 65113 0.66 0.894081
Target:  5'- gCCGCGGCucggcugGCGGUgGGgcUCGGCUUCc -3'
miRNA:   3'- -GGCGUCGcaa----CGCCAgUU--AGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 66877 0.66 0.894081
Target:  5'- cCCGCucGCGc-GCGGguacucGUCGGUCCCg -3'
miRNA:   3'- -GGCGu-CGCaaCGCCagu---UAGUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.