Results 1 - 20 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 116687 | 0.66 | 0.721759 |
Target: 5'- cCGGCGcUGCGGGcgcGGCaccgcacGGCUGGccgCGg -3' miRNA: 3'- -GCCGCcACGCCCu--UCG-------CCGACCaa-GC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 4555 | 0.66 | 0.713066 |
Target: 5'- gGGUGGcgcgGCGuGGAAGUGGaagUGGUgCGg -3' miRNA: 3'- gCCGCCa---CGC-CCUUCGCCg--ACCAaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 134953 | 0.66 | 0.713066 |
Target: 5'- gGGCGGggGCGGGGgcGGgGGCcccgGGggCc -3' miRNA: 3'- gCCGCCa-CGCCCU--UCgCCGa---CCaaGc -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 81228 | 0.66 | 0.722721 |
Target: 5'- uCGGCGGcagcgGCGGcGGGCcaGGCUGGg--- -3' miRNA: 3'- -GCCGCCa----CGCCcUUCG--CCGACCaagc -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 64467 | 0.66 | 0.663981 |
Target: 5'- gCGGCGGcGCGGGggGCcgaaGCaGGgagCa -3' miRNA: 3'- -GCCGCCaCGCCCuuCGc---CGaCCaa-Gc -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 121363 | 0.66 | 0.663981 |
Target: 5'- gCGGCGGgcgggGUGGGGAGCGGgcaaggCGg -3' miRNA: 3'- -GCCGCCa----CGCCCUUCGCCgaccaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 33161 | 0.66 | 0.673879 |
Target: 5'- gCGGCGGuUGCGccgcuGcAGCGGCUGGc-CGg -3' miRNA: 3'- -GCCGCC-ACGCc----CuUCGCCGACCaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 115683 | 0.66 | 0.673879 |
Target: 5'- gGaGCGc-GCGGcGGAGCGGCUGGccCGg -3' miRNA: 3'- gC-CGCcaCGCC-CUUCGCCGACCaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 30656 | 0.66 | 0.681774 |
Target: 5'- aGGCGGUGCuGGcgcuguuGGAG-GGCUacccggaGGUUCGg -3' miRNA: 3'- gCCGCCACG-CC-------CUUCgCCGA-------CCAAGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 18191 | 0.66 | 0.703346 |
Target: 5'- uGGCGGacgcGCGGcGAGGUcucgGGCUGGcggUCu -3' miRNA: 3'- gCCGCCa---CGCC-CUUCG----CCGACCa--AGc -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 19744 | 0.66 | 0.663981 |
Target: 5'- gCGGCGGgccgcuuaGCGGGAAgGCGGggugcgGGcUCGg -3' miRNA: 3'- -GCCGCCa-------CGCCCUU-CGCCga----CCaAGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 42963 | 0.66 | 0.663981 |
Target: 5'- gCGGgGGggGCGGGccgccGGcCGGCccgGGUUCGc -3' miRNA: 3'- -GCCgCCa-CGCCCu----UC-GCCGa--CCAAGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 32140 | 0.66 | 0.713066 |
Target: 5'- gGGCGGggGCGGGGgcGGgGGCcccgGGggCc -3' miRNA: 3'- gCCGCCa-CGCCCU--UCgCCGa---CCaaGc -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 12352 | 0.66 | 0.703346 |
Target: 5'- gCGGUGGgccugGCucGGGAgcgucGGCGGCUGcGgccUCGg -3' miRNA: 3'- -GCCGCCa----CG--CCCU-----UCGCCGAC-Ca--AGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 64196 | 0.66 | 0.703346 |
Target: 5'- gCGGCGGgaacaugcGCGGGucggggugcccGGGCGGC-GGcgCGa -3' miRNA: 3'- -GCCGCCa-------CGCCC-----------UUCGCCGaCCaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 16575 | 0.66 | 0.69357 |
Target: 5'- -cGCGGgacaGCGGGGucggGGCGGCguggGGUgccggCGa -3' miRNA: 3'- gcCGCCa---CGCCCU----UCGCCGa---CCAa----GC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 112088 | 0.66 | 0.683744 |
Target: 5'- cCGGCGGUcCGGcGcaAGGUGGaCUGGcUCGa -3' miRNA: 3'- -GCCGCCAcGCC-C--UUCGCC-GACCaAGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 52898 | 0.66 | 0.683744 |
Target: 5'- uGGCcaguccuaGGUccGCGGGcAGCGGCUcGGggCGc -3' miRNA: 3'- gCCG--------CCA--CGCCCuUCGCCGA-CCaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 47049 | 0.66 | 0.673879 |
Target: 5'- -cGCGGUGCGuGucGCGGCcGGcgCGg -3' miRNA: 3'- gcCGCCACGCcCuuCGCCGaCCaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 14170 | 0.66 | 0.673879 |
Target: 5'- gGGCGGccGCGcuaaaggcacGGGAGgGGCUGGcggCGg -3' miRNA: 3'- gCCGCCa-CGC----------CCUUCgCCGACCaa-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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