miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 3' -60.6 NC_001847.1 + 124456 1.08 0.001296
Target:  5'- cCGGCGGUGCGGGAAGCGGCUGGUUCGc -3'
miRNA:   3'- -GCCGCCACGCCCUUCGCCGACCAAGC- -5'
6355 3' -60.6 NC_001847.1 + 55083 0.77 0.184457
Target:  5'- uGGCGGccGCGGGggGCGGgUGGg-CGg -3'
miRNA:   3'- gCCGCCa-CGCCCuuCGCCgACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 15784 0.75 0.221535
Target:  5'- cCGGCGGcaagcgccgcgcgGCGGGAGGCGGC-GGUguaCGa -3'
miRNA:   3'- -GCCGCCa------------CGCCCUUCGCCGaCCAa--GC- -5'
6355 3' -60.6 NC_001847.1 + 96411 0.75 0.229022
Target:  5'- gCGGCGGcaaugGCGGGGccGGCGGCaGGcgCGg -3'
miRNA:   3'- -GCCGCCa----CGCCCU--UCGCCGaCCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 33500 0.75 0.240087
Target:  5'- gCGGCGGcGCGGGcGGCGGCgGGcgCc -3'
miRNA:   3'- -GCCGCCaCGCCCuUCGCCGaCCaaGc -5'
6355 3' -60.6 NC_001847.1 + 78298 0.73 0.316013
Target:  5'- aGGCGGUGCuc-GGGCGGCUGGgcCGc -3'
miRNA:   3'- gCCGCCACGcccUUCGCCGACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 58673 0.73 0.316013
Target:  5'- gCGGCGGUuggGCGGGcGGCaGGCUGGc--- -3'
miRNA:   3'- -GCCGCCA---CGCCCuUCG-CCGACCaagc -5'
6355 3' -60.6 NC_001847.1 + 28626 0.73 0.323098
Target:  5'- gCGGCGGccGCGGGGcccGCGGCcGuGUUCGu -3'
miRNA:   3'- -GCCGCCa-CGCCCUu--CGCCGaC-CAAGC- -5'
6355 3' -60.6 NC_001847.1 + 131439 0.73 0.323098
Target:  5'- gCGGCGGccGCGGGGcccGCGGCcGuGUUCGu -3'
miRNA:   3'- -GCCGCCa-CGCCCUu--CGCCGaC-CAAGC- -5'
6355 3' -60.6 NC_001847.1 + 108035 0.72 0.337622
Target:  5'- gCGGCGGccgGCGGGGcgcgcGCGGCaaagGGUUUGc -3'
miRNA:   3'- -GCCGCCa--CGCCCUu----CGCCGa---CCAAGC- -5'
6355 3' -60.6 NC_001847.1 + 15338 0.72 0.337622
Target:  5'- gGGCGG-GCGGGggGUGcGUgaUGGcUUCGa -3'
miRNA:   3'- gCCGCCaCGCCCuuCGC-CG--ACC-AAGC- -5'
6355 3' -60.6 NC_001847.1 + 5222 0.72 0.337622
Target:  5'- gCGGCGGccgGCGGGGcgcgcGCGGCaaagGGUUUGc -3'
miRNA:   3'- -GCCGCCa--CGCCCUu----CGCCGa---CCAAGC- -5'
6355 3' -60.6 NC_001847.1 + 103239 0.72 0.345059
Target:  5'- gGGCGG-GCGGGcGGCGGC-GGcggCGg -3'
miRNA:   3'- gCCGCCaCGCCCuUCGCCGaCCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 426 0.72 0.345059
Target:  5'- gGGCGG-GCGGGcGGCGGC-GGcggCGg -3'
miRNA:   3'- gCCGCCaCGCCCuUCGCCGaCCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 53817 0.72 0.360286
Target:  5'- aGGCGuGUcGCGGGc-GCGGCUGGcggCGg -3'
miRNA:   3'- gCCGC-CA-CGCCCuuCGCCGACCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 28079 0.72 0.368072
Target:  5'- -aGCGGggacugagGCGGGggGCGGC-GGUgcccUCGg -3'
miRNA:   3'- gcCGCCa-------CGCCCuuCGCCGaCCA----AGC- -5'
6355 3' -60.6 NC_001847.1 + 130892 0.72 0.368072
Target:  5'- -aGCGGggacugagGCGGGggGCGGC-GGUgcccUCGg -3'
miRNA:   3'- gcCGCCa-------CGCCCuuCGCCGaCCA----AGC- -5'
6355 3' -60.6 NC_001847.1 + 54496 0.72 0.3728
Target:  5'- aCGGCGGcgccggggccgggGUGGGggGCGG-UGGggCGg -3'
miRNA:   3'- -GCCGCCa------------CGCCCuuCGCCgACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 100506 0.72 0.375974
Target:  5'- aCGGCGGUGCGGuGuGGUgGGCUGcGggUCGc -3'
miRNA:   3'- -GCCGCCACGCC-CuUCG-CCGAC-Ca-AGC- -5'
6355 3' -60.6 NC_001847.1 + 95635 0.72 0.375974
Target:  5'- uGGCGGgccgcucuggcGCGGGggGCGGCgcgggccgcucUGGcgCGg -3'
miRNA:   3'- gCCGCCa----------CGCCCuuCGCCG-----------ACCaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.