miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 3' -60.6 NC_001847.1 + 64 0.67 0.624224
Target:  5'- gCGGCGG-GCGGGGgcggGGUGGgggaUGGgcgCGg -3'
miRNA:   3'- -GCCGCCaCGCCCU----UCGCCg---ACCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 426 0.72 0.345059
Target:  5'- gGGCGG-GCGGGcGGCGGC-GGcggCGg -3'
miRNA:   3'- gCCGCCaCGCCCuUCGCCGaCCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 466 0.69 0.534772
Target:  5'- gCGGCGGcgGCGGcGGcagcagcGGCGGCggcGGggCGg -3'
miRNA:   3'- -GCCGCCa-CGCC-CU-------UCGCCGa--CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 4555 0.66 0.713066
Target:  5'- gGGUGGcgcgGCGuGGAAGUGGaagUGGUgCGg -3'
miRNA:   3'- gCCGCCa---CGC-CCUUCGCCg--ACCAaGC- -5'
6355 3' -60.6 NC_001847.1 + 4803 0.67 0.633179
Target:  5'- gCGGUGGccUGgGGGAgacgggguaggggGGCGGgUGGgUCGg -3'
miRNA:   3'- -GCCGCC--ACgCCCU-------------UCGCCgACCaAGC- -5'
6355 3' -60.6 NC_001847.1 + 4871 0.67 0.634173
Target:  5'- gGGgGGgcgGCGGGcAGCGGCaGGg--- -3'
miRNA:   3'- gCCgCCa--CGCCCuUCGCCGaCCaagc -5'
6355 3' -60.6 NC_001847.1 + 5222 0.72 0.337622
Target:  5'- gCGGCGGccgGCGGGGcgcgcGCGGCaaagGGUUUGc -3'
miRNA:   3'- -GCCGCCa--CGCCCUu----CGCCGa---CCAAGC- -5'
6355 3' -60.6 NC_001847.1 + 7253 0.69 0.488418
Target:  5'- uGGCuGUGCGGGc-GCGGCgGGggCa -3'
miRNA:   3'- gCCGcCACGCCCuuCGCCGaCCaaGc -5'
6355 3' -60.6 NC_001847.1 + 8463 0.67 0.644121
Target:  5'- aGGCGGcgccggGCcGGggGCGGCgcucggccgGGggCGg -3'
miRNA:   3'- gCCGCCa-----CGcCCuuCGCCGa--------CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 8986 0.68 0.584554
Target:  5'- gGGCGGgcaGaCGGGGguGGgGGCUGGgugggCGg -3'
miRNA:   3'- gCCGCCa--C-GCCCU--UCgCCGACCaa---GC- -5'
6355 3' -60.6 NC_001847.1 + 10911 0.67 0.614281
Target:  5'- uGGCGGcGCGGuacuaccgcGAGGCgagccGGCUGGcgCGg -3'
miRNA:   3'- gCCGCCaCGCC---------CUUCG-----CCGACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 11665 0.69 0.507126
Target:  5'- gCGGCGGUGaaGGggGCG-CUGcaUCGg -3'
miRNA:   3'- -GCCGCCACgcCCuuCGCcGACcaAGC- -5'
6355 3' -60.6 NC_001847.1 + 11782 0.7 0.452024
Target:  5'- gGGCGG-GCGGGcAGUGGCgcuUUCGa -3'
miRNA:   3'- gCCGCCaCGCCCuUCGCCGaccAAGC- -5'
6355 3' -60.6 NC_001847.1 + 12352 0.66 0.703346
Target:  5'- gCGGUGGgccugGCucGGGAgcgucGGCGGCUGcGgccUCGg -3'
miRNA:   3'- -GCCGCCa----CG--CCCU-----UCGCCGAC-Ca--AGC- -5'
6355 3' -60.6 NC_001847.1 + 12958 0.71 0.425724
Target:  5'- gCGGCGG-GCcGGggGUGGCccggucgcUGGUUCc -3'
miRNA:   3'- -GCCGCCaCGcCCuuCGCCG--------ACCAAGc -5'
6355 3' -60.6 NC_001847.1 + 14170 0.66 0.673879
Target:  5'- gGGCGGccGCGcuaaaggcacGGGAGgGGCUGGcggCGg -3'
miRNA:   3'- gCCGCCa-CGC----------CCUUCgCCGACCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 14469 0.67 0.638153
Target:  5'- uCGGC-GUGCGcuccaacgccgucccGGAGGC-GCUGGUUCu -3'
miRNA:   3'- -GCCGcCACGC---------------CCUUCGcCGACCAAGc -5'
6355 3' -60.6 NC_001847.1 + 15338 0.72 0.337622
Target:  5'- gGGCGG-GCGGGggGUGcGUgaUGGcUUCGa -3'
miRNA:   3'- gCCGCCaCGCCCuuCGC-CG--ACC-AAGC- -5'
6355 3' -60.6 NC_001847.1 + 15558 0.67 0.634173
Target:  5'- gGGUGGcGCGGGGgaacccccaucGGCGGCaGGcggCGg -3'
miRNA:   3'- gCCGCCaCGCCCU-----------UCGCCGaCCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 15784 0.75 0.221535
Target:  5'- cCGGCGGcaagcgccgcgcgGCGGGAGGCGGC-GGUguaCGa -3'
miRNA:   3'- -GCCGCCa------------CGCCCUUCGCCGaCCAa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.