Results 21 - 40 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 14170 | 0.66 | 0.673879 |
Target: 5'- gGGCGGccGCGcuaaaggcacGGGAGgGGCUGGcggCGg -3' miRNA: 3'- gCCGCCa-CGC----------CCUUCgCCGACCaa-GC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 19744 | 0.66 | 0.663981 |
Target: 5'- gCGGCGGgccgcuuaGCGGGAAgGCGGggugcgGGcUCGg -3' miRNA: 3'- -GCCGCCa-------CGCCCUU-CGCCga----CCaAGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 42963 | 0.66 | 0.663981 |
Target: 5'- gCGGgGGggGCGGGccgccGGcCGGCccgGGUUCGc -3' miRNA: 3'- -GCCgCCa-CGCCCu----UC-GCCGa--CCAAGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 64467 | 0.66 | 0.663981 |
Target: 5'- gCGGCGGcGCGGGggGCcgaaGCaGGgagCa -3' miRNA: 3'- -GCCGCCaCGCCCuuCGc---CGaCCaa-Gc -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 121363 | 0.66 | 0.663981 |
Target: 5'- gCGGCGGgcgggGUGGGGAGCGGgcaaggCGg -3' miRNA: 3'- -GCCGCCa----CGCCCUUCGCCgaccaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 116164 | 0.67 | 0.654059 |
Target: 5'- uGGCGGccGCGGGcgccGCGGCcgcgcUGGUcgUCGc -3' miRNA: 3'- gCCGCCa-CGCCCuu--CGCCG-----ACCA--AGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 111276 | 0.67 | 0.644121 |
Target: 5'- aGGCGGcgccggGCcGGggGCGGCgcucggccgGGggCGg -3' miRNA: 3'- gCCGCCa-----CGcCCuuCGCCGa--------CCaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 8463 | 0.67 | 0.644121 |
Target: 5'- aGGCGGcgccggGCcGGggGCGGCgcucggccgGGggCGg -3' miRNA: 3'- gCCGCCa-----CGcCCuuCGCCGa--------CCaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 14469 | 0.67 | 0.638153 |
Target: 5'- uCGGC-GUGCGcuccaacgccgucccGGAGGC-GCUGGUUCu -3' miRNA: 3'- -GCCGcCACGC---------------CCUUCGcCGACCAAGc -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 54386 | 0.67 | 0.635168 |
Target: 5'- gCGGCGGgcggccgcgggcgagGCGGGcgccgccGCGGUUGGccUCGg -3' miRNA: 3'- -GCCGCCa--------------CGCCCuu-----CGCCGACCa-AGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 107684 | 0.67 | 0.634173 |
Target: 5'- gGGgGGgcgGCGGGcAGCGGCaGGg--- -3' miRNA: 3'- gCCgCCa--CGCCCuUCGCCGaCCaagc -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 15558 | 0.67 | 0.634173 |
Target: 5'- gGGUGGcGCGGGGgaacccccaucGGCGGCaGGcggCGg -3' miRNA: 3'- gCCGCCaCGCCCU-----------UCGCCGaCCaa-GC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 34012 | 0.67 | 0.634173 |
Target: 5'- gCGGCGGUGCuGGGcacCGcGCUGGgccaggCGa -3' miRNA: 3'- -GCCGCCACG-CCCuucGC-CGACCaa----GC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 115668 | 0.67 | 0.634173 |
Target: 5'- -cGCGuccGUGCGGGuGAGCGGCUGcg-CGg -3' miRNA: 3'- gcCGC---CACGCCC-UUCGCCGACcaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 119527 | 0.67 | 0.634173 |
Target: 5'- gCGGCGGccGCGGccGGCaGGCUGGg--- -3' miRNA: 3'- -GCCGCCa-CGCCcuUCG-CCGACCaagc -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 4871 | 0.67 | 0.634173 |
Target: 5'- gGGgGGgcgGCGGGcAGCGGCaGGg--- -3' miRNA: 3'- gCCgCCa--CGCCCuUCGCCGaCCaagc -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 107616 | 0.67 | 0.633179 |
Target: 5'- gCGGUGGccUGgGGGAgacgggguaggggGGCGGgUGGgUCGg -3' miRNA: 3'- -GCCGCC--ACgCCCU-------------UCGCCgACCaAGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 36182 | 0.67 | 0.633179 |
Target: 5'- gCGGCGGUGCGcGGcgaggccgcguacGAGgGGCUGcg-CGc -3' miRNA: 3'- -GCCGCCACGC-CC-------------UUCgCCGACcaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 4803 | 0.67 | 0.633179 |
Target: 5'- gCGGUGGccUGgGGGAgacgggguaggggGGCGGgUGGgUCGg -3' miRNA: 3'- -GCCGCC--ACgCCCU-------------UCGCCgACCaAGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 31419 | 0.67 | 0.624224 |
Target: 5'- cCGGCGccgGCGGGcGGCGGCcGGcggccgCGg -3' miRNA: 3'- -GCCGCca-CGCCCuUCGCCGaCCaa----GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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