miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 5' -57.1 NC_001847.1 + 132881 0.66 0.850142
Target:  5'- aUUCGuucCCGAGgGCcgCCGCGUCaCCUg -3'
miRNA:   3'- -AAGUucaGGUUCgCGa-GGCGCAG-GGG- -5'
6355 5' -57.1 NC_001847.1 + 66752 0.66 0.825376
Target:  5'- ---uGG-CCGAGUGCUUCGUGUCgCUCg -3'
miRNA:   3'- aaguUCaGGUUCGCGAGGCGCAG-GGG- -5'
6355 5' -57.1 NC_001847.1 + 39545 0.66 0.822808
Target:  5'- ----uGUCCAcguaagccucgaagGGCGCgUCCGCGaaggccgCCCCg -3'
miRNA:   3'- aaguuCAGGU--------------UCGCG-AGGCGCa------GGGG- -5'
6355 5' -57.1 NC_001847.1 + 6934 0.66 0.816755
Target:  5'- ---uGGcCCGcAGUGCuUCCGCGgUCCCCc -3'
miRNA:   3'- aaguUCaGGU-UCGCG-AGGCGC-AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 18375 0.66 0.816755
Target:  5'- -gCGGGcCCGAuGC-CUCgGCGUCCUCg -3'
miRNA:   3'- aaGUUCaGGUU-CGcGAGgCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 64749 0.66 0.807964
Target:  5'- --gAGGUCCGuaaucuuggccAGCGCgagCuCGCG-CCCCg -3'
miRNA:   3'- aagUUCAGGU-----------UCGCGa--G-GCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 50063 0.66 0.807964
Target:  5'- -gCGGGUCCGcGCGCggCGCGgaCCCg -3'
miRNA:   3'- aaGUUCAGGUuCGCGagGCGCagGGG- -5'
6355 5' -57.1 NC_001847.1 + 1549 0.66 0.807964
Target:  5'- -cCAAGcCCGcccgcccgauAGCGCgcccgcgcCUGUGUCCCCa -3'
miRNA:   3'- aaGUUCaGGU----------UCGCGa-------GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 102073 0.66 0.816755
Target:  5'- -gCAAGggCAGGCGCgggCCGCGcgcgaCCCg -3'
miRNA:   3'- aaGUUCagGUUCGCGa--GGCGCag---GGG- -5'
6355 5' -57.1 NC_001847.1 + 323 0.66 0.825376
Target:  5'- --gGAG-CUucGCGCUccacgcCCGCGUCCCUc -3'
miRNA:   3'- aagUUCaGGuuCGCGA------GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 41560 0.66 0.83382
Target:  5'- --aGAGUgCGAGCGCgUCGUGUCCg- -3'
miRNA:   3'- aagUUCAgGUUCGCGaGGCGCAGGgg -5'
6355 5' -57.1 NC_001847.1 + 48581 0.66 0.83382
Target:  5'- ----cGUCUucGGCGCcguccUCgGCGUCCCCc -3'
miRNA:   3'- aaguuCAGGu-UCGCG-----AGgCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 83569 0.66 0.850142
Target:  5'- cUCGGGcuUCUgguAGGCGC-CCGCGagCCCg -3'
miRNA:   3'- aAGUUC--AGG---UUCGCGaGGCGCagGGG- -5'
6355 5' -57.1 NC_001847.1 + 36554 0.66 0.850142
Target:  5'- ----cGcCCAAGCGC-CgGCG-CCCCa -3'
miRNA:   3'- aaguuCaGGUUCGCGaGgCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 121051 0.66 0.850142
Target:  5'- ---uGGUCCGccAGCGcCUCCGCGaUgUCCa -3'
miRNA:   3'- aaguUCAGGU--UCGC-GAGGCGC-AgGGG- -5'
6355 5' -57.1 NC_001847.1 + 96011 0.66 0.842077
Target:  5'- uUUCGAGcCCcAGCGCggCGCGUCggCCg -3'
miRNA:   3'- -AAGUUCaGGuUCGCGagGCGCAGg-GG- -5'
6355 5' -57.1 NC_001847.1 + 54933 0.66 0.842077
Target:  5'- cUUGAGcgCCcuGCGCUUCGCGgcgCaCCCg -3'
miRNA:   3'- aAGUUCa-GGuuCGCGAGGCGCa--G-GGG- -5'
6355 5' -57.1 NC_001847.1 + 104706 0.66 0.83382
Target:  5'- cUCGugcAGcCCcGGCGcCUCCGCGcCCgCCa -3'
miRNA:   3'- aAGU---UCaGGuUCGC-GAGGCGCaGG-GG- -5'
6355 5' -57.1 NC_001847.1 + 91886 0.66 0.83382
Target:  5'- -gCAGGUgccccCCGGGCGCcgcgccgcCCGCGcgCCCCc -3'
miRNA:   3'- aaGUUCA-----GGUUCGCGa-------GGCGCa-GGGG- -5'
6355 5' -57.1 NC_001847.1 + 64844 0.66 0.83382
Target:  5'- -cCGAGaCCAgcgcGGCGCgCCGCGaCCCg -3'
miRNA:   3'- aaGUUCaGGU----UCGCGaGGCGCaGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.