miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 5' -57.1 NC_001847.1 + 108 0.74 0.381999
Target:  5'- --uGGGUCC-GGCGCcCCGCG-CCCCg -3'
miRNA:   3'- aagUUCAGGuUCGCGaGGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 288 0.67 0.780655
Target:  5'- -cCGAGcCCGcgcgGGCGCcguccCCGCG-CCCCg -3'
miRNA:   3'- aaGUUCaGGU----UCGCGa----GGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 323 0.66 0.825376
Target:  5'- --gGAG-CUucGCGCUccacgcCCGCGUCCCUc -3'
miRNA:   3'- aagUUCaGGuuCGCGA------GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 589 0.72 0.49007
Target:  5'- -cCGGGUCCuGGCcCUCCGCGgccgCUCCg -3'
miRNA:   3'- aaGUUCAGGuUCGcGAGGCGCa---GGGG- -5'
6355 5' -57.1 NC_001847.1 + 1549 0.66 0.807964
Target:  5'- -cCAAGcCCGcccgcccgauAGCGCgcccgcgcCUGUGUCCCCa -3'
miRNA:   3'- aaGUUCaGGU----------UCGCGa-------GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 2165 0.67 0.789905
Target:  5'- -cCAGGUCUcgcAGCGC-CCGCG-CCgCCu -3'
miRNA:   3'- aaGUUCAGGu--UCGCGaGGCGCaGG-GG- -5'
6355 5' -57.1 NC_001847.1 + 3585 0.69 0.682274
Target:  5'- -gCAGGUCCGGGCccgcgaGCUUCGCG-CUCUg -3'
miRNA:   3'- aaGUUCAGGUUCG------CGAGGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 3648 0.79 0.189485
Target:  5'- -cCAGGUCCAccAGCGCcgcguacugcuuccCCGCGUCCCCc -3'
miRNA:   3'- aaGUUCAGGU--UCGCGa-------------GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 4400 0.76 0.297897
Target:  5'- ---cGGcCCAGGCGCugUCCGCGUCCuCCg -3'
miRNA:   3'- aaguUCaGGUUCGCG--AGGCGCAGG-GG- -5'
6355 5' -57.1 NC_001847.1 + 4466 0.73 0.434089
Target:  5'- -cCGcGUCCucGGCGCcccCCGCGUCCCUg -3'
miRNA:   3'- aaGUuCAGGu-UCGCGa--GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 4568 0.68 0.732567
Target:  5'- ----cGUCCucgcuGCuCUCCGCGUCCUCc -3'
miRNA:   3'- aaguuCAGGuu---CGcGAGGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 4965 0.72 0.49973
Target:  5'- cUUCAGG-CCGGGCGC-CCGCGgggucgugacgUCCUCg -3'
miRNA:   3'- -AAGUUCaGGUUCGCGaGGCGC-----------AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 6934 0.66 0.816755
Target:  5'- ---uGGcCCGcAGUGCuUCCGCGgUCCCCc -3'
miRNA:   3'- aaguUCaGGU-UCGCG-AGGCGC-AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 9040 0.7 0.610335
Target:  5'- -cCGAGcUCCu-GUGCUCCGCccCCCCg -3'
miRNA:   3'- aaGUUC-AGGuuCGCGAGGCGcaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 12091 0.66 0.850142
Target:  5'- -gCGGGUCC-GGCGC-CCGCGgCCg- -3'
miRNA:   3'- aaGUUCAGGuUCGCGaGGCGCaGGgg -5'
6355 5' -57.1 NC_001847.1 + 13386 0.76 0.312057
Target:  5'- -gCAcGUCCGGGCGCgCCGCGggCCCUg -3'
miRNA:   3'- aaGUuCAGGUUCGCGaGGCGCa-GGGG- -5'
6355 5' -57.1 NC_001847.1 + 17123 0.67 0.771271
Target:  5'- -gCAGGuuUCCGcuGGCGCUCCcggcuuCGUCCUCg -3'
miRNA:   3'- aaGUUC--AGGU--UCGCGAGGc-----GCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 17194 0.7 0.628866
Target:  5'- aUCGGGUcggCCAGGCccaGCUCUGCGgcgcuuacguugCCCCa -3'
miRNA:   3'- aAGUUCA---GGUUCG---CGAGGCGCa-----------GGGG- -5'
6355 5' -57.1 NC_001847.1 + 18375 0.66 0.816755
Target:  5'- -gCGGGcCCGAuGC-CUCgGCGUCCUCg -3'
miRNA:   3'- aaGUUCaGGUU-CGcGAGgCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 18724 0.69 0.661799
Target:  5'- cUCGAGcCCAAGCGCgcggcCCGgGgCCCa -3'
miRNA:   3'- aAGUUCaGGUUCGCGa----GGCgCaGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.