miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 5' -57.1 NC_001847.1 + 106461 0.79 0.189485
Target:  5'- -cCAGGUCCAccAGCGCcgcguacugcuuccCCGCGUCCCCc -3'
miRNA:   3'- aaGUUCAGGU--UCGCGa-------------GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 26312 0.69 0.661799
Target:  5'- -gCGAGUCguGGgGCa--GCGUCCCCa -3'
miRNA:   3'- aaGUUCAGguUCgCGaggCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 106398 0.69 0.682274
Target:  5'- -gCAGGUCCGGGCccgcgaGCUUCGCG-CUCUg -3'
miRNA:   3'- aaGUUCAGGUUCG------CGAGGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 12091 0.66 0.850142
Target:  5'- -gCGGGUCC-GGCGC-CCGCGgCCg- -3'
miRNA:   3'- aaGUUCAGGuUCGCGaGGCGCaGGgg -5'
6355 5' -57.1 NC_001847.1 + 25011 0.75 0.326721
Target:  5'- aUCGAGUCC-AGCaGCUUCaGCGcCCCCa -3'
miRNA:   3'- aAGUUCAGGuUCG-CGAGG-CGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 46872 0.75 0.349664
Target:  5'- -gCAGG-CgAAGCGCUCCcccCGUCCCCg -3'
miRNA:   3'- aaGUUCaGgUUCGCGAGGc--GCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 24215 0.74 0.407523
Target:  5'- -cCAGGagCAGGCGCUCgGCGaUCUCCa -3'
miRNA:   3'- aaGUUCagGUUCGCGAGgCGC-AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 107279 0.73 0.434089
Target:  5'- -cCGcGUCCucGGCGCcccCCGCGUCCCUg -3'
miRNA:   3'- aaGUuCAGGu-UCGCGa--GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 39340 0.71 0.539159
Target:  5'- -cCGGGUCCAAgcaccaguagauGCGC-CCGCGccgCCCCc -3'
miRNA:   3'- aaGUUCAGGUU------------CGCGaGGCGCa--GGGG- -5'
6355 5' -57.1 NC_001847.1 + 79889 0.69 0.641227
Target:  5'- --aAAGgcgCCAAuGCGCUCgGCGUgcucCCCCa -3'
miRNA:   3'- aagUUCa--GGUU-CGCGAGgCGCA----GGGG- -5'
6355 5' -57.1 NC_001847.1 + 84600 0.7 0.610335
Target:  5'- ---cGGUCCAgcAGCGCcgCUGCGUCgCCu -3'
miRNA:   3'- aaguUCAGGU--UCGCGa-GGCGCAGgGG- -5'
6355 5' -57.1 NC_001847.1 + 4965 0.72 0.49973
Target:  5'- cUUCAGG-CCGGGCGC-CCGCGgggucgugacgUCCUCg -3'
miRNA:   3'- -AAGUUCaGGUUCGCGaGGCGC-----------AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 62162 0.77 0.258422
Target:  5'- -cCAGcUCCcgcgcGGGCGCgUCCGCGUCCCCa -3'
miRNA:   3'- aaGUUcAGG-----UUCGCG-AGGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 111853 0.7 0.610335
Target:  5'- -cCGAGcUCCu-GUGCUCCGCccCCCCg -3'
miRNA:   3'- aaGUUC-AGGuuCGCGAGGCGcaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 78552 0.76 0.284241
Target:  5'- -gCGAGUCCcGGCGCUgccguUCGCGUCaCCCu -3'
miRNA:   3'- aaGUUCAGGuUCGCGA-----GGCGCAG-GGG- -5'
6355 5' -57.1 NC_001847.1 + 103402 0.72 0.49007
Target:  5'- -cCGGGUCCuGGCcCUCCGCGgccgCUCCg -3'
miRNA:   3'- aaGUUCAGGuUCGcGAGGCGCa---GGGG- -5'
6355 5' -57.1 NC_001847.1 + 21953 0.7 0.620627
Target:  5'- cUCGucGUCCGGGCGCUgggCCGCGgCgCCg -3'
miRNA:   3'- aAGUu-CAGGUUCGCGA---GGCGCaGgGG- -5'
6355 5' -57.1 NC_001847.1 + 18724 0.69 0.661799
Target:  5'- cUCGAGcCCAAGCGCgcggcCCGgGgCCCa -3'
miRNA:   3'- aAGUUCaGGUUCGCGa----GGCgCaGGGg -5'
6355 5' -57.1 NC_001847.1 + 107213 0.76 0.297897
Target:  5'- ---cGGcCCAGGCGCugUCCGCGUCCuCCg -3'
miRNA:   3'- aaguUCaGGUUCGCG--AGGCGCAGG-GG- -5'
6355 5' -57.1 NC_001847.1 + 102921 0.74 0.381999
Target:  5'- --uGGGUCC-GGCGCcCCGCG-CCCCg -3'
miRNA:   3'- aagUUCAGGuUCGCGaGGCGCaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.