miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 5' -57.1 NC_001847.1 + 102073 0.66 0.816755
Target:  5'- -gCAAGggCAGGCGCgggCCGCGcgcgaCCCg -3'
miRNA:   3'- aaGUUCagGUUCGCGa--GGCGCag---GGG- -5'
6355 5' -57.1 NC_001847.1 + 109747 0.66 0.816755
Target:  5'- ---uGGcCCGcAGUGCuUCCGCGgUCCCCc -3'
miRNA:   3'- aaguUCaGGU-UCGCG-AGGCGC-AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 98585 0.66 0.816755
Target:  5'- --gAAGUCCAuuggggcgccGGCGCUUgggcggCGCGgcaCCCCg -3'
miRNA:   3'- aagUUCAGGU----------UCGCGAG------GCGCa--GGGG- -5'
6355 5' -57.1 NC_001847.1 + 6934 0.66 0.816755
Target:  5'- ---uGGcCCGcAGUGCuUCCGCGgUCCCCc -3'
miRNA:   3'- aaguUCaGGU-UCGCG-AGGCGC-AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 18375 0.66 0.816755
Target:  5'- -gCGGGcCCGAuGC-CUCgGCGUCCUCg -3'
miRNA:   3'- aaGUUCaGGUU-CGcGAGgCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 1549 0.66 0.807964
Target:  5'- -cCAAGcCCGcccgcccgauAGCGCgcccgcgcCUGUGUCCCCa -3'
miRNA:   3'- aaGUUCaGGU----------UCGCGa-------GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 50063 0.66 0.807964
Target:  5'- -gCGGGUCCGcGCGCggCGCGgaCCCg -3'
miRNA:   3'- aaGUUCAGGUuCGCGagGCGCagGGG- -5'
6355 5' -57.1 NC_001847.1 + 64749 0.66 0.807964
Target:  5'- --gAGGUCCGuaaucuuggccAGCGCgagCuCGCG-CCCCg -3'
miRNA:   3'- aagUUCAGGU-----------UCGCGa--G-GCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 79972 0.67 0.799011
Target:  5'- --aAAGcUCCAGcGCGCcCCGCGUCUggCCg -3'
miRNA:   3'- aagUUC-AGGUU-CGCGaGGCGCAGG--GG- -5'
6355 5' -57.1 NC_001847.1 + 66691 0.67 0.789905
Target:  5'- cUCGccUCCAcagcgGGCGCUcCCGCGccaugcugcuguUCCCCa -3'
miRNA:   3'- aAGUucAGGU-----UCGCGA-GGCGC------------AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 123878 0.67 0.789905
Target:  5'- aUUCAGGaagCCcAGCGC-CCGCGgcaagcUUCCCg -3'
miRNA:   3'- -AAGUUCa--GGuUCGCGaGGCGC------AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 2165 0.67 0.789905
Target:  5'- -cCAGGUCUcgcAGCGC-CCGCG-CCgCCu -3'
miRNA:   3'- aaGUUCAGGu--UCGCGaGGCGCaGG-GG- -5'
6355 5' -57.1 NC_001847.1 + 45247 0.67 0.789905
Target:  5'- -aCAAccUCGGGCGC--CGCGUCCCCg -3'
miRNA:   3'- aaGUUcaGGUUCGCGagGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 121379 0.67 0.789905
Target:  5'- -gCAGGUUCAGGCugcccaucagccGCUgCGCGaucagCCCCa -3'
miRNA:   3'- aaGUUCAGGUUCG------------CGAgGCGCa----GGGG- -5'
6355 5' -57.1 NC_001847.1 + 103101 0.67 0.780655
Target:  5'- -cCGAGcCCGcgcgGGCGCcguccCCGCG-CCCCg -3'
miRNA:   3'- aaGUUCaGGU----UCGCGa----GGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 288 0.67 0.780655
Target:  5'- -cCGAGcCCGcgcgGGCGCcguccCCGCG-CCCCg -3'
miRNA:   3'- aaGUUCaGGU----UCGCGa----GGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 68792 0.67 0.771271
Target:  5'- -aCGGGgacgaucgCCAcggcGGCGC-CCGCG-CCCCa -3'
miRNA:   3'- aaGUUCa-------GGU----UCGCGaGGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 17123 0.67 0.771271
Target:  5'- -gCAGGuuUCCGcuGGCGCUCCcggcuuCGUCCUCg -3'
miRNA:   3'- aaGUUC--AGGU--UCGCGAGGc-----GCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 63244 0.67 0.770325
Target:  5'- -cCGGGUCCGccgcugcAGCGCcaucaCCGCGUCgcaguCCCa -3'
miRNA:   3'- aaGUUCAGGU-------UCGCGa----GGCGCAG-----GGG- -5'
6355 5' -57.1 NC_001847.1 + 57674 0.67 0.76176
Target:  5'- -cCGGG-CCGGGCGC-CCGgCGcccgCCCCa -3'
miRNA:   3'- aaGUUCaGGUUCGCGaGGC-GCa---GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.