miRNA display CGI


Results 1 - 20 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 3' -61.4 NC_001847.1 + 78 0.69 0.462708
Target:  5'- cGGGCCCG-GgcCCGCUCUgggCuCCGCc- -3'
miRNA:   3'- -UCCGGGCgCauGGCGAGAa--G-GGCGcg -5'
6356 3' -61.4 NC_001847.1 + 267 0.77 0.168778
Target:  5'- gGGGCCCGagccCGgggGCCGC-CgagCCCGCGCg -3'
miRNA:   3'- -UCCGGGC----GCa--UGGCGaGaa-GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 369 0.71 0.362144
Target:  5'- gGGGCCCGCc--CCGCg---CgCCGCGCg -3'
miRNA:   3'- -UCCGGGCGcauGGCGagaaG-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 488 0.66 0.655143
Target:  5'- gGGuGCCCGCGccuCCGCgccugCUgccggCCCGCc- -3'
miRNA:   3'- -UC-CGGGCGCau-GGCGa----GAa----GGGCGcg -5'
6356 3' -61.4 NC_001847.1 + 597 0.73 0.295317
Target:  5'- uGGCCCuccGCG-GCCGCUCcgcagcggcgcgcggCCCGCGCc -3'
miRNA:   3'- uCCGGG---CGCaUGGCGAGaa-------------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 886 0.68 0.534381
Target:  5'- cGGCCCGCGccgggGCCGCcgCggccgccggccgccgCCCGCcgGCg -3'
miRNA:   3'- uCCGGGCGCa----UGGCGa-Gaa-------------GGGCG--CG- -5'
6356 3' -61.4 NC_001847.1 + 946 0.78 0.145529
Target:  5'- cGGCCCGCGcgcGCCGCUCcaCgCUGCGCc -3'
miRNA:   3'- uCCGGGCGCa--UGGCGAGaaG-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 1028 0.69 0.461809
Target:  5'- -cGCCCGCGgcgcGCCGCagcagcacgagcgUC-UCCCGCGg -3'
miRNA:   3'- ucCGGGCGCa---UGGCG-------------AGaAGGGCGCg -5'
6356 3' -61.4 NC_001847.1 + 1094 0.68 0.508735
Target:  5'- cGGGCgCCGCG-GCCGCgggCggCgCCGcCGCg -3'
miRNA:   3'- -UCCG-GGCGCaUGGCGa--GaaG-GGC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 1512 0.68 0.508735
Target:  5'- uGGCCCG--UugUGUUCccCCCGCGCg -3'
miRNA:   3'- uCCGGGCgcAugGCGAGaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 1580 0.7 0.444915
Target:  5'- cGGCgCGCGccagcgcGCCGCUCgggCCaGCGCg -3'
miRNA:   3'- uCCGgGCGCa------UGGCGAGaa-GGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 1782 0.67 0.564367
Target:  5'- cAGGuCCCGCGUcgagagcagcagcacGCCcugcgcgccgagcgcGCUCacgUCCgGCGCg -3'
miRNA:   3'- -UCC-GGGCGCA---------------UGG---------------CGAGa--AGGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 2096 0.71 0.377822
Target:  5'- gGGGCCCGCGcggcggcggGCCGCgaUCUcggCCaGCGCc -3'
miRNA:   3'- -UCCGGGCGCa--------UGGCG--AGAa--GGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 2184 0.67 0.615529
Target:  5'- uGGUCCGCGaGCCGCg----CCGCGa -3'
miRNA:   3'- uCCGGGCGCaUGGCGagaagGGCGCg -5'
6356 3' -61.4 NC_001847.1 + 2360 0.67 0.615529
Target:  5'- cGGCCCggccgcgucgGCGgcgGCgGCUUUUCgCCgGCGCc -3'
miRNA:   3'- uCCGGG----------CGCa--UGgCGAGAAG-GG-CGCG- -5'
6356 3' -61.4 NC_001847.1 + 2535 0.69 0.471743
Target:  5'- cGGgCCGCGggACCGCUgCUcUCCgGCGg -3'
miRNA:   3'- uCCgGGCGCa-UGGCGA-GA-AGGgCGCg -5'
6356 3' -61.4 NC_001847.1 + 2589 0.67 0.615529
Target:  5'- cGGCcgCCGCG-GCCGCacgCgagCCCGcCGCg -3'
miRNA:   3'- uCCG--GGCGCaUGGCGa--Gaa-GGGC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 2847 0.68 0.518176
Target:  5'- gGGGUCCGCcaUGCCGCUgCgaCUCGCGg -3'
miRNA:   3'- -UCCGGGCGc-AUGGCGA-GaaGGGCGCg -5'
6356 3' -61.4 NC_001847.1 + 2871 0.69 0.471743
Target:  5'- cAGGCCgaCGCGcggGCCGC-CgcgCCGCGCg -3'
miRNA:   3'- -UCCGG--GCGCa--UGGCGaGaagGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 2926 0.66 0.674877
Target:  5'- cGGUCCGCGccgccagcgcgGCCGC-C-UCCaGCGCg -3'
miRNA:   3'- uCCGGGCGCa----------UGGCGaGaAGGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.