miRNA display CGI


Results 21 - 40 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 3' -61.4 NC_001847.1 + 27456 0.66 0.674877
Target:  5'- gGGGCCC---UGCCGCUg--CCCGcCGCc -3'
miRNA:   3'- -UCCGGGcgcAUGGCGAgaaGGGC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 37109 0.66 0.674877
Target:  5'- cGGCCCGCugGUGuucaUGCUCUggggCGCGCa -3'
miRNA:   3'- uCCGGGCG--CAUg---GCGAGAagg-GCGCG- -5'
6356 3' -61.4 NC_001847.1 + 61433 0.66 0.674877
Target:  5'- -cGCCCGCG-GCCGCgccgCCgGgCGCg -3'
miRNA:   3'- ucCGGGCGCaUGGCGagaaGGgC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 116495 0.66 0.673893
Target:  5'- cGGGCaCgGCGUcgcgcucGCCGagcacCUCUgCCUGCGCu -3'
miRNA:   3'- -UCCG-GgCGCA-------UGGC-----GAGAaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 70904 0.66 0.673893
Target:  5'- aGGGCCCGcCGUGgccucccCCGCcaUCU-CuaGCGCg -3'
miRNA:   3'- -UCCGGGC-GCAU-------GGCG--AGAaGggCGCG- -5'
6356 3' -61.4 NC_001847.1 + 112852 0.66 0.671924
Target:  5'- cGGCuCCGCGUucgucacggccgacACgCGCgcgCUgCgCCGCGCg -3'
miRNA:   3'- uCCG-GGCGCA--------------UG-GCGa--GAaG-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 10039 0.66 0.671924
Target:  5'- cGGCuCCGCGUucgucacggccgacACgCGCgcgCUgCgCCGCGCg -3'
miRNA:   3'- uCCG-GGCGCA--------------UG-GCGa--GAaG-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 66639 0.66 0.671924
Target:  5'- cGGCgggggCGCGUuuguggacugccugGCgCGCUUgcgCCCGCGCg -3'
miRNA:   3'- uCCGg----GCGCA--------------UG-GCGAGaa-GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 9640 0.66 0.670939
Target:  5'- -cGCCgGCccGCCGCUCgagcagccgggcgUCCuCGCGCc -3'
miRNA:   3'- ucCGGgCGcaUGGCGAGa------------AGG-GCGCG- -5'
6356 3' -61.4 NC_001847.1 + 58061 0.66 0.668968
Target:  5'- cGGGCCgccgauuggcgcgcgCGCGcGCCGCagCgggUgCCGCGCc -3'
miRNA:   3'- -UCCGG---------------GCGCaUGGCGa-Ga--AgGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 70714 0.66 0.666009
Target:  5'- gGGcGCCCGCGgcgagcgcgaggacaGCCGCUgccaauagCgCCGCGCa -3'
miRNA:   3'- -UC-CGGGCGCa--------------UGGCGAgaa-----G-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 10213 0.66 0.665023
Target:  5'- cGGGCCCaggGCGcgcCCGCUgUcgCCCccgGCGCg -3'
miRNA:   3'- -UCCGGG---CGCau-GGCGAgAa-GGG---CGCG- -5'
6356 3' -61.4 NC_001847.1 + 59711 0.66 0.665023
Target:  5'- cAGGaCuCCGCGgucgcgauCgCGCUCggcgUCCgGCGCg -3'
miRNA:   3'- -UCC-G-GGCGCau------G-GCGAGa---AGGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 31108 0.66 0.665023
Target:  5'- uGGCCUGCGggcgGCgCGCgCUggagCUgGCGCc -3'
miRNA:   3'- uCCGGGCGCa---UG-GCGaGAa---GGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 15204 0.66 0.665023
Target:  5'- cGGaCCCGC--ACCGCg---CCgGCGCg -3'
miRNA:   3'- uCC-GGGCGcaUGGCGagaaGGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 130067 0.66 0.665023
Target:  5'- cGGCgaCGCGUcGCCGUcCUgggCCGCGCc -3'
miRNA:   3'- uCCGg-GCGCA-UGGCGaGAag-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 108253 0.66 0.665023
Target:  5'- cAGGCCaugaucCGC-UGCCGCgcgUUCCCGCa- -3'
miRNA:   3'- -UCCGG------GCGcAUGGCGag-AAGGGCGcg -5'
6356 3' -61.4 NC_001847.1 + 65909 0.66 0.665023
Target:  5'- uAGGCCaGCGuUGCCGCggcgCCgGCGa -3'
miRNA:   3'- -UCCGGgCGC-AUGGCGagaaGGgCGCg -5'
6356 3' -61.4 NC_001847.1 + 32035 0.66 0.665023
Target:  5'- gGGGCgCGgGgACgGCg---CCCGCGCg -3'
miRNA:   3'- -UCCGgGCgCaUGgCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 66919 0.66 0.665023
Target:  5'- cGuGCuuGCGgccccGCCGCgg--CCCGUGCg -3'
miRNA:   3'- uC-CGggCGCa----UGGCGagaaGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.