miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 124398 1.1 0.003768
Target:  5'- uCUGCCAGAAAAUGCGCCUGUACGCCGg -3'
miRNA:   3'- -GACGGUCUUUUACGCGGACAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 34620 0.79 0.344161
Target:  5'- -cGCCgAGGAAGUccgGCGCCUGcGCGCCGa -3'
miRNA:   3'- gaCGG-UCUUUUA---CGCGGACaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 39835 0.78 0.411959
Target:  5'- cCUGCCGGcgcc-GCGCCUGgagGCGCCa -3'
miRNA:   3'- -GACGGUCuuuuaCGCGGACa--UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 82597 0.78 0.411959
Target:  5'- -cGCUcGcgGcgGCGCCUGUGCGCCGc -3'
miRNA:   3'- gaCGGuCuuUuaCGCGGACAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 133997 0.76 0.477619
Target:  5'- gCUGCCGGAGccgcGCGCCgagGCGCCGc -3'
miRNA:   3'- -GACGGUCUUuua-CGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 82100 0.76 0.507306
Target:  5'- -cGCCGGAGg--GCGCCUGcguuUGCGCCu -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGAC----AUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 31184 0.76 0.477619
Target:  5'- gCUGCCGGAGccgcGCGCCgagGCGCCGc -3'
miRNA:   3'- -GACGGUCUUuua-CGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 59312 0.75 0.548039
Target:  5'- gUGCCAGGGcGcgGCGCCggcgGCGCCGu -3'
miRNA:   3'- gACGGUCUU-UuaCGCGGaca-UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 28381 0.74 0.610821
Target:  5'- -cGCCGGAGAcgGCGCCcccccCGCCGc -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGacau-GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 131194 0.74 0.610821
Target:  5'- -cGCCGGAGAcgGCGCCcccccCGCCGc -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGacau-GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 45360 0.73 0.663666
Target:  5'- -cGCCAGcgcGAUGacgGCCUcGUACGCCGg -3'
miRNA:   3'- gaCGGUCuu-UUACg--CGGA-CAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 111253 0.73 0.67419
Target:  5'- -gGUCGGAGGcgGCGCCggGUcggaggcgGCGCCGg -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGa-CA--------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 29563 0.73 0.642546
Target:  5'- -cGCCGGcgGggGCGCCg--GCGCCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 28980 0.73 0.67419
Target:  5'- -cGCCGGGAAcGUGCGCCaUGcuagagcGCGCCGu -3'
miRNA:   3'- gaCGGUCUUU-UACGCGG-ACa------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 79068 0.73 0.643603
Target:  5'- -cGCCGGAGccgggcgcgugcgacGUGUGCCcGUGCGCCGc -3'
miRNA:   3'- gaCGGUCUUu--------------UACGCGGaCAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 19670 0.73 0.653115
Target:  5'- -cGCCGGAAAcUGCGaCCggGUgcGCGCCGu -3'
miRNA:   3'- gaCGGUCUUUuACGC-GGa-CA--UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 132376 0.73 0.642546
Target:  5'- -cGCCGGcgGggGCGCCg--GCGCCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 43005 0.73 0.642546
Target:  5'- -cGCCGGggGGgcGCGCCgGgcCGCCGa -3'
miRNA:   3'- gaCGGUCuuUUa-CGCGGaCauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 8440 0.73 0.67419
Target:  5'- -gGUCGGAGGcgGCGCCggGUcggaggcgGCGCCGg -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGa-CA--------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 127312 0.72 0.726063
Target:  5'- gUGCCGGAGAcacgGCGaCCg--GCGCCGa -3'
miRNA:   3'- gACGGUCUUUua--CGC-GGacaUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.