miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 134580 0.68 0.878911
Target:  5'- -cGCCGGAGAcgcgGCGCUggcGUcCGCCGc -3'
miRNA:   3'- gaCGGUCUUUua--CGCGGa--CAuGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 133997 0.76 0.477619
Target:  5'- gCUGCCGGAGccgcGCGCCgagGCGCCGc -3'
miRNA:   3'- -GACGGUCUUuua-CGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 133533 0.68 0.886144
Target:  5'- gCUGCCGcGGcgcAGUGCGCCgc-GCGCUGg -3'
miRNA:   3'- -GACGGU-CUu--UUACGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 133201 0.72 0.695118
Target:  5'- -cGCUGGAGGAgcucUGCGCCgc-GCGCCGg -3'
miRNA:   3'- gaCGGUCUUUU----ACGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 133167 0.71 0.775771
Target:  5'- gCUGCCcGggGAgGCGCUggcgGCGCCGc -3'
miRNA:   3'- -GACGGuCuuUUaCGCGGaca-UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 133131 0.66 0.961222
Target:  5'- gUGCUGGAAAAccUGCGgCUGaagcuaGCGCCu -3'
miRNA:   3'- gACGGUCUUUU--ACGCgGACa-----UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 132376 0.73 0.642546
Target:  5'- -cGCCGGcgGggGCGCCg--GCGCCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 132055 0.72 0.695118
Target:  5'- cCUGCCGGcc---GCgGCCUGcGCGCCGg -3'
miRNA:   3'- -GACGGUCuuuuaCG-CGGACaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 131526 0.69 0.862963
Target:  5'- -cGCCAGGAGcgGCGCauguuugGUcuuugccgcaacgACGCCGa -3'
miRNA:   3'- gaCGGUCUUUuaCGCGga-----CA-------------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 131224 0.66 0.944799
Target:  5'- gCUGCCAGcgcuGUGCGUgcGUccGCGCCa -3'
miRNA:   3'- -GACGGUCuuu-UACGCGgaCA--UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 131194 0.74 0.610821
Target:  5'- -cGCCGGAGAcgGCGCCcccccCGCCGc -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGacau-GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 129780 0.67 0.935098
Target:  5'- -cGCCGGAGccUGgGCCcGgccGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuuACgCGGaCa--UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 127953 0.66 0.944799
Target:  5'- -cGCUcGAGGAcGCGCuccaaaucCUGUACGCCa -3'
miRNA:   3'- gaCGGuCUUUUaCGCG--------GACAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 127312 0.72 0.726063
Target:  5'- gUGCCGGAGAcacgGCGaCCg--GCGCCGa -3'
miRNA:   3'- gACGGUCUUUua--CGC-GGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 127025 0.66 0.961222
Target:  5'- -cGCCccuGggGccccGCGCCUGcgcugGCGCCGc -3'
miRNA:   3'- gaCGGu--CuuUua--CGCGGACa----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 125430 0.66 0.95748
Target:  5'- -cGCCGGAGGAcccGCGCgUGgcugGCCGg -3'
miRNA:   3'- gaCGGUCUUUUa--CGCGgACaug-CGGC- -5'
6356 5' -53.2 NC_001847.1 + 124569 0.66 0.944799
Target:  5'- -cGCgCGGggGGgccgccgGCGCCgGgcccgGCGCCGg -3'
miRNA:   3'- gaCG-GUCuuUUa------CGCGGaCa----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 124522 0.67 0.929866
Target:  5'- -aGCCGGAGGAccaGCGCCagcagggcgcgGgccgGCGCCGg -3'
miRNA:   3'- gaCGGUCUUUUa--CGCGGa----------Ca---UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 124398 1.1 0.003768
Target:  5'- uCUGCCAGAAAAUGCGCCUGUACGCCGg -3'
miRNA:   3'- -GACGGUCUUUUACGCGGACAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 124261 0.66 0.953498
Target:  5'- gCUGCCGcAGGcgGUcuGCCUGgGCGCCc -3'
miRNA:   3'- -GACGGUcUUUuaCG--CGGACaUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.