Results 21 - 40 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6356 | 5' | -53.2 | NC_001847.1 | + | 35320 | 0.72 | 0.684677 |
Target: 5'- -cGCUGGAAGcgggcGUGCGCCUGgagcUGCCGa -3' miRNA: 3'- gaCGGUCUUU-----UACGCGGACau--GCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 11333 | 0.72 | 0.684677 |
Target: 5'- -cGCCAGGAcg-GCGCCUGccGCuGCCGc -3' miRNA: 3'- gaCGGUCUUuuaCGCGGACa-UG-CGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 96571 | 0.72 | 0.695118 |
Target: 5'- uCUGCUGGcc-GUGUGCCUGgGCGCCc -3' miRNA: 3'- -GACGGUCuuuUACGCGGACaUGCGGc -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 29242 | 0.72 | 0.695118 |
Target: 5'- cCUGCCGGcc---GCgGCCUGcGCGCCGg -3' miRNA: 3'- -GACGGUCuuuuaCG-CGGACaUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 133201 | 0.72 | 0.695118 |
Target: 5'- -cGCUGGAGGAgcucUGCGCCgc-GCGCCGg -3' miRNA: 3'- gaCGGUCUUUU----ACGCGGacaUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 132055 | 0.72 | 0.695118 |
Target: 5'- cCUGCCGGcc---GCgGCCUGcGCGCCGg -3' miRNA: 3'- -GACGGUCuuuuaCG-CGGACaUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 19074 | 0.72 | 0.715821 |
Target: 5'- -cGCCGugcGAAAGUGCGCCccgGUGC-CCGa -3' miRNA: 3'- gaCGGU---CUUUUACGCGGa--CAUGcGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 32427 | 0.72 | 0.726063 |
Target: 5'- -aGCCGGggGGUGCggGCCUuu-CGCCGc -3' miRNA: 3'- gaCGGUCuuUUACG--CGGAcauGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 127312 | 0.72 | 0.726063 |
Target: 5'- gUGCCGGAGAcacgGCGaCCg--GCGCCGa -3' miRNA: 3'- gACGGUCUUUua--CGC-GGacaUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 75815 | 0.71 | 0.746277 |
Target: 5'- aUGCCGGGcugguAcgGCGCCgccgGCGCCGc -3' miRNA: 3'- gACGGUCUu----UuaCGCGGaca-UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 45673 | 0.71 | 0.756229 |
Target: 5'- -gGUCAGAugcgcGAUGCGCUUGUugGCg- -3' miRNA: 3'- gaCGGUCUu----UUACGCGGACAugCGgc -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 39249 | 0.71 | 0.756229 |
Target: 5'- -cGUCAGGcgGUGCGCUUGgcuCGCCc -3' miRNA: 3'- gaCGGUCUuuUACGCGGACau-GCGGc -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 8070 | 0.71 | 0.765086 |
Target: 5'- -cGCCAGcgGggGgGCCUGUccaccacggcgagGCGCCGa -3' miRNA: 3'- gaCGGUCuuUuaCgCGGACA-------------UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 110883 | 0.71 | 0.765086 |
Target: 5'- -cGCCAGcgGggGgGCCUGUccaccacggcgagGCGCCGa -3' miRNA: 3'- gaCGGUCuuUuaCgCGGACA-------------UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 38712 | 0.71 | 0.766064 |
Target: 5'- gUGCCuccGggGccGCGCCUGc-CGCCGg -3' miRNA: 3'- gACGGu--CuuUuaCGCGGACauGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 133167 | 0.71 | 0.775771 |
Target: 5'- gCUGCCcGggGAgGCGCUggcgGCGCCGc -3' miRNA: 3'- -GACGGuCuuUUaCGCGGaca-UGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 96288 | 0.71 | 0.775771 |
Target: 5'- aCUGCgagCAGguGGUGUGUgaGUGCGCCGc -3' miRNA: 3'- -GACG---GUCuuUUACGCGgaCAUGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 88209 | 0.71 | 0.775771 |
Target: 5'- gCUGCCGGAcacccAAAaGCGCCU---CGCCGg -3' miRNA: 3'- -GACGGUCU-----UUUaCGCGGAcauGCGGC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 14436 | 0.71 | 0.775771 |
Target: 5'- aCUGCCuc-GAcgGCGCCgggGUGCGCgGc -3' miRNA: 3'- -GACGGucuUUuaCGCGGa--CAUGCGgC- -5' |
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6356 | 5' | -53.2 | NC_001847.1 | + | 30354 | 0.71 | 0.775771 |
Target: 5'- gCUGCCcGggGAgGCGCUggcgGCGCCGc -3' miRNA: 3'- -GACGGuCuuUUaCGCGGaca-UGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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