miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 35320 0.72 0.684677
Target:  5'- -cGCUGGAAGcgggcGUGCGCCUGgagcUGCCGa -3'
miRNA:   3'- gaCGGUCUUU-----UACGCGGACau--GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 11333 0.72 0.684677
Target:  5'- -cGCCAGGAcg-GCGCCUGccGCuGCCGc -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGACa-UG-CGGC- -5'
6356 5' -53.2 NC_001847.1 + 96571 0.72 0.695118
Target:  5'- uCUGCUGGcc-GUGUGCCUGgGCGCCc -3'
miRNA:   3'- -GACGGUCuuuUACGCGGACaUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 29242 0.72 0.695118
Target:  5'- cCUGCCGGcc---GCgGCCUGcGCGCCGg -3'
miRNA:   3'- -GACGGUCuuuuaCG-CGGACaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 133201 0.72 0.695118
Target:  5'- -cGCUGGAGGAgcucUGCGCCgc-GCGCCGg -3'
miRNA:   3'- gaCGGUCUUUU----ACGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 132055 0.72 0.695118
Target:  5'- cCUGCCGGcc---GCgGCCUGcGCGCCGg -3'
miRNA:   3'- -GACGGUCuuuuaCG-CGGACaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 19074 0.72 0.715821
Target:  5'- -cGCCGugcGAAAGUGCGCCccgGUGC-CCGa -3'
miRNA:   3'- gaCGGU---CUUUUACGCGGa--CAUGcGGC- -5'
6356 5' -53.2 NC_001847.1 + 32427 0.72 0.726063
Target:  5'- -aGCCGGggGGUGCggGCCUuu-CGCCGc -3'
miRNA:   3'- gaCGGUCuuUUACG--CGGAcauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 127312 0.72 0.726063
Target:  5'- gUGCCGGAGAcacgGCGaCCg--GCGCCGa -3'
miRNA:   3'- gACGGUCUUUua--CGC-GGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 75815 0.71 0.746277
Target:  5'- aUGCCGGGcugguAcgGCGCCgccgGCGCCGc -3'
miRNA:   3'- gACGGUCUu----UuaCGCGGaca-UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 45673 0.71 0.756229
Target:  5'- -gGUCAGAugcgcGAUGCGCUUGUugGCg- -3'
miRNA:   3'- gaCGGUCUu----UUACGCGGACAugCGgc -5'
6356 5' -53.2 NC_001847.1 + 39249 0.71 0.756229
Target:  5'- -cGUCAGGcgGUGCGCUUGgcuCGCCc -3'
miRNA:   3'- gaCGGUCUuuUACGCGGACau-GCGGc -5'
6356 5' -53.2 NC_001847.1 + 8070 0.71 0.765086
Target:  5'- -cGCCAGcgGggGgGCCUGUccaccacggcgagGCGCCGa -3'
miRNA:   3'- gaCGGUCuuUuaCgCGGACA-------------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 110883 0.71 0.765086
Target:  5'- -cGCCAGcgGggGgGCCUGUccaccacggcgagGCGCCGa -3'
miRNA:   3'- gaCGGUCuuUuaCgCGGACA-------------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 38712 0.71 0.766064
Target:  5'- gUGCCuccGggGccGCGCCUGc-CGCCGg -3'
miRNA:   3'- gACGGu--CuuUuaCGCGGACauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 133167 0.71 0.775771
Target:  5'- gCUGCCcGggGAgGCGCUggcgGCGCCGc -3'
miRNA:   3'- -GACGGuCuuUUaCGCGGaca-UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 96288 0.71 0.775771
Target:  5'- aCUGCgagCAGguGGUGUGUgaGUGCGCCGc -3'
miRNA:   3'- -GACG---GUCuuUUACGCGgaCAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 88209 0.71 0.775771
Target:  5'- gCUGCCGGAcacccAAAaGCGCCU---CGCCGg -3'
miRNA:   3'- -GACGGUCU-----UUUaCGCGGAcauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 14436 0.71 0.775771
Target:  5'- aCUGCCuc-GAcgGCGCCgggGUGCGCgGc -3'
miRNA:   3'- -GACGGucuUUuaCGCGGa--CAUGCGgC- -5'
6356 5' -53.2 NC_001847.1 + 30354 0.71 0.775771
Target:  5'- gCUGCCcGggGAgGCGCUggcgGCGCCGc -3'
miRNA:   3'- -GACGGuCuuUUaCGCGGaca-UGCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.