miRNA display CGI


Results 21 - 40 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 15744 0.68 0.912025
Target:  5'- -gGCCGGGAAGcacGCGCCaaagGUguacccgcgagccGCGCCGa -3'
miRNA:   3'- gaCGGUCUUUUa--CGCGGa---CA-------------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 18682 0.67 0.924379
Target:  5'- gCUGagCAGAAcc-GCGCCgcgcGUGCGCCa -3'
miRNA:   3'- -GACg-GUCUUuuaCGCGGa---CAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 18889 0.68 0.893138
Target:  5'- -cGCCAGAGuccgcaGCGCCgcGUAcCGCCa -3'
miRNA:   3'- gaCGGUCUUuua---CGCGGa-CAU-GCGGc -5'
6356 5' -53.2 NC_001847.1 + 19074 0.72 0.715821
Target:  5'- -cGCCGugcGAAAGUGCGCCccgGUGC-CCGa -3'
miRNA:   3'- gaCGGU---CUUUUACGCGGa--CAUGcGGC- -5'
6356 5' -53.2 NC_001847.1 + 19270 0.68 0.906388
Target:  5'- -aGCCGGcggcgcaGCGUCUGUGCGgCGg -3'
miRNA:   3'- gaCGGUCuuuua--CGCGGACAUGCgGC- -5'
6356 5' -53.2 NC_001847.1 + 19670 0.73 0.653115
Target:  5'- -cGCCGGAAAcUGCGaCCggGUgcGCGCCGu -3'
miRNA:   3'- gaCGGUCUUUuACGC-GGa-CA--UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 21709 0.67 0.929866
Target:  5'- -aGCCGGAGGAccaGCGCCagcagggcgcgGgccgGCGCCGg -3'
miRNA:   3'- gaCGGUCUUUUa--CGCGGa----------Ca---UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 21756 0.66 0.944799
Target:  5'- -cGCgCGGggGGgccgccgGCGCCgGgcccgGCGCCGg -3'
miRNA:   3'- gaCG-GUCuuUUa------CGCGGaCa----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 22082 0.66 0.949273
Target:  5'- uUGCgCAGAc-GUGCGCCgacGCGCUGc -3'
miRNA:   3'- gACG-GUCUuuUACGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 23051 0.68 0.912639
Target:  5'- -aGCCAGuccaccuUGCGCCggacCGCCGg -3'
miRNA:   3'- gaCGGUCuuuu---ACGCGGacauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 28187 0.68 0.912639
Target:  5'- cCUGgCGGccgc-GCGCCUGcGCGCCa -3'
miRNA:   3'- -GACgGUCuuuuaCGCGGACaUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 28381 0.74 0.610821
Target:  5'- -cGCCGGAGAcgGCGCCcccccCGCCGc -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGacau-GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 28980 0.73 0.67419
Target:  5'- -cGCCGGGAAcGUGCGCCaUGcuagagcGCGCCGu -3'
miRNA:   3'- gaCGGUCUUU-UACGCGG-ACa------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 29242 0.72 0.695118
Target:  5'- cCUGCCGGcc---GCgGCCUGcGCGCCGg -3'
miRNA:   3'- -GACGGUCuuuuaCG-CGGACaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 29563 0.73 0.642546
Target:  5'- -cGCCGGcgGggGCGCCg--GCGCCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 29899 0.7 0.813131
Target:  5'- cCUGCCGcccGAAGUGCGCCcgccUGUGC-CCGc -3'
miRNA:   3'- -GACGGUc--UUUUACGCGG----ACAUGcGGC- -5'
6356 5' -53.2 NC_001847.1 + 30237 0.66 0.95748
Target:  5'- -gGCCG--AGGUGCGCgUGU-CGCUGg -3'
miRNA:   3'- gaCGGUcuUUUACGCGgACAuGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 30354 0.71 0.775771
Target:  5'- gCUGCCcGggGAgGCGCUggcgGCGCCGc -3'
miRNA:   3'- -GACGGuCuuUUaCGCGGaca-UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 30720 0.68 0.886144
Target:  5'- gCUGCCGcGGcgcAGUGCGCCgc-GCGCUGg -3'
miRNA:   3'- -GACGGU-CUu--UUACGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 31019 0.66 0.953498
Target:  5'- uUGCCGGcgcgcgcGCGCCggcaACGCCGg -3'
miRNA:   3'- gACGGUCuuuua--CGCGGaca-UGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.