miRNA display CGI


Results 21 - 40 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 96288 0.71 0.775771
Target:  5'- aCUGCgagCAGguGGUGUGUgaGUGCGCCGc -3'
miRNA:   3'- -GACG---GUCuuUUACGCGgaCAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 39249 0.71 0.756229
Target:  5'- -cGUCAGGcgGUGCGCUUGgcuCGCCc -3'
miRNA:   3'- gaCGGUCUuuUACGCGGACau-GCGGc -5'
6356 5' -53.2 NC_001847.1 + 19670 0.73 0.653115
Target:  5'- -cGCCGGAAAcUGCGaCCggGUgcGCGCCGu -3'
miRNA:   3'- gaCGGUCUUUuACGC-GGa-CA--UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 133997 0.76 0.477619
Target:  5'- gCUGCCGGAGccgcGCGCCgagGCGCCGc -3'
miRNA:   3'- -GACGGUCUUuua-CGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 71223 0.69 0.871443
Target:  5'- -cGCUGGGugaugGAGUGUGCCaUG-ACGCCGg -3'
miRNA:   3'- gaCGGUCU-----UUUACGCGG-ACaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 29899 0.7 0.813131
Target:  5'- cCUGCCGcccGAAGUGCGCCcgccUGUGC-CCGc -3'
miRNA:   3'- -GACGGUc--UUUUACGCGG----ACAUGcGGC- -5'
6356 5' -53.2 NC_001847.1 + 19074 0.72 0.715821
Target:  5'- -cGCCGugcGAAAGUGCGCCccgGUGC-CCGa -3'
miRNA:   3'- gaCGGU---CUUUUACGCGGa--CAUGcGGC- -5'
6356 5' -53.2 NC_001847.1 + 39835 0.78 0.411959
Target:  5'- cCUGCCGGcgcc-GCGCCUGgagGCGCCa -3'
miRNA:   3'- -GACGGUCuuuuaCGCGGACa--UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 34527 0.7 0.804031
Target:  5'- -cGCCGGc-GAUGCGCCgcc-CGCCGg -3'
miRNA:   3'- gaCGGUCuuUUACGCGGacauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 82597 0.78 0.411959
Target:  5'- -cGCUcGcgGcgGCGCCUGUGCGCCGc -3'
miRNA:   3'- gaCGGuCuuUuaCGCGGACAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 45673 0.71 0.756229
Target:  5'- -gGUCAGAugcgcGAUGCGCUUGUugGCg- -3'
miRNA:   3'- gaCGGUCUu----UUACGCGGACAugCGgc -5'
6356 5' -53.2 NC_001847.1 + 133167 0.71 0.775771
Target:  5'- gCUGCCcGggGAgGCGCUggcgGCGCCGc -3'
miRNA:   3'- -GACGGuCuuUUaCGCGGaca-UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 35320 0.72 0.684677
Target:  5'- -cGCUGGAAGcgggcGUGCGCCUGgagcUGCCGa -3'
miRNA:   3'- gaCGGUCUUU-----UACGCGGACau--GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 111253 0.73 0.67419
Target:  5'- -gGUCGGAGGcgGCGCCggGUcggaggcgGCGCCGg -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGa-CA--------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 43005 0.73 0.642546
Target:  5'- -cGCCGGggGGgcGCGCCgGgcCGCCGa -3'
miRNA:   3'- gaCGGUCuuUUa-CGCGGaCauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 82100 0.76 0.507306
Target:  5'- -cGCCGGAGg--GCGCCUGcguuUGCGCCu -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGAC----AUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 18889 0.68 0.893138
Target:  5'- -cGCCAGAGuccgcaGCGCCgcGUAcCGCCa -3'
miRNA:   3'- gaCGGUCUUuua---CGCGGa-CAU-GCGGc -5'
6356 5' -53.2 NC_001847.1 + 134580 0.68 0.878911
Target:  5'- -cGCCGGAGAcgcgGCGCUggcGUcCGCCGc -3'
miRNA:   3'- gaCGGUCUUUua--CGCGGa--CAuGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 59498 0.69 0.839342
Target:  5'- -cGgCAGggGGUGCGCCg--AgGCCGc -3'
miRNA:   3'- gaCgGUCuuUUACGCGGacaUgCGGC- -5'
6356 5' -53.2 NC_001847.1 + 39338 0.7 0.821171
Target:  5'- -aGCCGGGuccaagcaccaguAGAUGCGCCc--GCGCCGc -3'
miRNA:   3'- gaCGGUCU-------------UUUACGCGGacaUGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.